| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_3780 |
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| Symbol | cydD |
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| ID | 1171427 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella oneidensis MR-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004347 |
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| Strand | - |
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| Start bp | 3931073 |
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| End bp | 3933013 |
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| Gene Length | 1941 bp |
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| Protein Length | 646 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 637345553 |
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| Product | cysteine/glutathione ABC transporter membrane/ATP-binding component |
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| Protein accession | NP_719317 |
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| Protein GI | 24375274 |
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| COG category | [C] Energy production and conversion
[O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG4988] ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components |
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| TIGRFAM ID | [TIGR02857] thiol reductant ABC exporter, CydD subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGATAAGT CGTTAGAAAA GTCCCTTCTC GTTTGGCTCA AGTCTCAAAA AAAGGCCTGT
GGCTGGTTTC TTAAACTCTC GGTCTGGTGT GGAATATTAA GTGCTATTGC ATTGATCGTG
CAGGCTTATT TAATTGCCAC TCTTCTCGAT GGTGTGATTA TTGGTAATGG ATTGCTCGGA
TTCGGCGCCG ATAGCGCTCA GTCGACTATC GGCGCAAGTG ATTATCTGCC ACATCTTATG
GCTCTGATTG GCTTAATGTT GCTGCGAGCA GGGCTAGCCT ATGCCCGTGA GCGCACCAGT
TTTGAAGCGG GTAGGCGTTT GCGTCAACAT ATTCGCAGTG CAGTAATGGA TAAGTTAACT
CGGCTTGGTC CTGCGTTTAT TAAAGGCAAA CCCGCTGGCA GTTGGGCAAG CATAGTGTTA
GAGCAAGTTG AAGATTTACA AGACTTTTAT GCTCGTTATC TTCCGCAAAT GACGCTGGCG
GGCGTGATCC CATTGCTGAT TTTGATCGCT GTTTTTCCTA TCAACTGGGC GGCGGGGTTA
ATTTTACTGT TAACGGCCCC ATTAATTCCG CTGTTTATGA TTTTAGTTGG TATGGGCGCC
GCCGATGCCA ATCGCAAAAA CTTCAATGCC TTAGCTCGAT TAAGTGGCCG TTTTATGGAC
AGATTAAAAG GGCTTGCGAC CTTAAAGCTA TTCAATCGAG GCGATGCTGA GCTGAAGGTG
ATCGAAAAGG CATCGGAGGA GTTTCGTAGC CGAACCATGT CGGTGCTGCG TATGGCCTTT
TTAAGCTCGG CGGTGCTGGA GTTTTTTGCG GCGGTGTCGA TTGCGGTATT AGCGGTTTAC
TTTGGTTTTA GTTACTTAGG TCACCTCGAT TTTGGCTACT ATGGCATGCA CGCCCATGTT
GGGCCAAATG CTAATGAAGG ATTACCTTTT AGCCTGTTTG TCGGTTTGTT TATCCTCATT
TTAGCGCCTG AGTTTTATCA GCCGTTAAGG GATATGGGCA CCCATTATCA CGCTAAAGCG
CAGGCGATTG GGGCAGCGCA GGCCCTAATG ACGCTGCTTG AGCATCCCGA TCCTCAGCCA
ACAGACTCAG TTGCGAGTGA TACCAGGCTT GATAAGATTG AAAGCATGCT CGCTCAAGAA
CTTGAGGTCT TTAGCGTCGA TGGCAGCCGC TTATTAGGAC CCATCAGTTT TGAGCTAAAA
CAGGGGGAAC ATTTAGCCTT AGTCGGCCCA AGTGGCGCAG GTAAAACCAG TTTACTCAAC
GCGCTATTAG GATTTTTACC CTATCAAGGC AAGTTACTCA TTAATGGTGT TGAACTCTCA
AGCATCGATC TTGCCCATTG GCGGCGCCAG TTAGCGTGGC TTGGACAGGA GCCACAGTTA
TTCCATGGCA CAGTGCGGGA AAACGTAGCC CTAGCCAATC CTAATATCAC AGACGAGCAA
GTGTGGCACT TGCTAGAGCA AGCCAATATC CATGAATTTG TGCGCACGCA ACCCCTTGGT
TTAGCTACAG CTATCGGTGA ACAATCATCA ACCTTATCCG TCGGGCAGGC ACAACGTATT
GCACTGGCGC GGGCACTAGC ACAGGCGTCG CAGGTGTTTA TCCTTGATGA ACCCTCCGCG
AGTTTAGACA GTGTTAGTGA GCAGCTCCTC ACACTCACCT TGAACCGTGC GATGGCGGGC
AAGATGTGCA TTATGGTGAC CCACAGATTA GATCAGCTCG ATCGCATGCA GTCGATCTTA
GTCTTGGATA AGGGGTTGAT TGTCCAGCGA GGTGATTTTG CGACTCTCTC TGTGCAGGCA
GGATTATTCC AAACCATGTT GCATGAAAAT ACCGAATCGG TGGCAGATAT TGAGTTAGCC
GCTGTTGAGC CGCAGAGCCG TGTTGATATC CAGAGTGACT TAATACCAAC ATCCAATTCA
ACCGAAGGAG CGGCGCAATG A
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| Protein sequence | MDKSLEKSLL VWLKSQKKAC GWFLKLSVWC GILSAIALIV QAYLIATLLD GVIIGNGLLG
FGADSAQSTI GASDYLPHLM ALIGLMLLRA GLAYARERTS FEAGRRLRQH IRSAVMDKLT
RLGPAFIKGK PAGSWASIVL EQVEDLQDFY ARYLPQMTLA GVIPLLILIA VFPINWAAGL
ILLLTAPLIP LFMILVGMGA ADANRKNFNA LARLSGRFMD RLKGLATLKL FNRGDAELKV
IEKASEEFRS RTMSVLRMAF LSSAVLEFFA AVSIAVLAVY FGFSYLGHLD FGYYGMHAHV
GPNANEGLPF SLFVGLFILI LAPEFYQPLR DMGTHYHAKA QAIGAAQALM TLLEHPDPQP
TDSVASDTRL DKIESMLAQE LEVFSVDGSR LLGPISFELK QGEHLALVGP SGAGKTSLLN
ALLGFLPYQG KLLINGVELS SIDLAHWRRQ LAWLGQEPQL FHGTVRENVA LANPNITDEQ
VWHLLEQANI HEFVRTQPLG LATAIGEQSS TLSVGQAQRI ALARALAQAS QVFILDEPSA
SLDSVSEQLL TLTLNRAMAG KMCIMVTHRL DQLDRMQSIL VLDKGLIVQR GDFATLSVQA
GLFQTMLHEN TESVADIELA AVEPQSRVDI QSDLIPTSNS TEGAAQ
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