Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SO_3553 |
Symbol | |
ID | 1171224 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella oneidensis MR-1 |
Kingdom | Bacteria |
Replicon accession | NC_004347 |
Strand | + |
Start bp | 3710411 |
End bp | 3712177 |
Gene Length | 1767 bp |
Protein Length | 588 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 637345352 |
Product | putative sulfate transporter YchM |
Protein accession | NP_719100 |
Protein GI | 24375057 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG0659] Sulfate permease and related transporters (MFS superfamily) |
TIGRFAM ID | [TIGR00815] high affinity sulphate transporter 1 |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGACCCAC ACGTGTCACA CTCTGCTCAT TTGTTTTCAT TAAGAATTGC GCACGCTCTT AACGAAGCGT GCGTAAAAGA TAGGTATTCG TTTAAACGTT TTGGACAAGA TCTTCTCGCT GGGTTGACGG TCGGGATAAT TGCTATTCCG CTGGCTATGG CTCTGGCGAT TGCTAGCGGC GTGCCGCCAC AATACGGCCT TTACACTGCG ATTGTCGGTG GTTTTATCAT TGCGATGACG GGCGGTTCCC GTTACAGCGT CTCAGGGCCA ACCGCCGCTT TTGTGGTATT GCTCTATCCT ATAGCGCAGC AGTTTGGCTT AGCGGGGTTA CTCATTGCCA CCGTTATGTC AGGCATGATG CTCGTTGCCA TGGCTATGCT AAGACTAGGC CGATTAATTC TCTACATTCC AGAATCAGTC ACCTTAGGCT TTACCGCTGG TATTGGAGTG GTGATTGCCA CGTTACAGCT AAAAGACTTT TTTGGTCTGC AGATTGAGCA TATGCCAGAG CAGTACTTTG CCAAACTCAT GGCGCTAGGG CAGGCGCTAC CATCGCTTCA TCTACCAAGC CTGTTCATAG CAGCTGCTAC CTTAGCCACC ATGTTACTGT GGCCTAGATT AAAAATTCCT GTACCGGCAC ACCTTCCCGC TATCGCCTTA GGCAGTATCC TCGCCTTAAT ACTCAATGCC ATGGGCGCAG AGATTGAAAC CATTGGAACA CGTTTCCACT ACCAATTAAC TGATGGCGGC ATAGGAAGTG GTATCCCCGC AGTCTTGCCT CACTTTGAAT GGCCTTGGCT ACAGACAGGT CCAAATGGTC AAGCCTTTGA ATTTAATCTG GCTGCCTTTC AAGCCTTACT CCCAGCAGCA TTTGCCATCG CCATGTTAGG CGCAATTGAA TCACTACTCT GTGCCGTAGT CCTTGATGGC ATGACGGGCA AGCGCCACAG TGCAAACAGT GAACTCCTTG GCCAAGGGAT AGGCAATATT ATCGCCCCCT TCTTTGGTGG GATCCCCGCA ACCGCGGCAA TTGCCCGCAG TGCGGCAAAC GTAAAAGCTG GCGCTCAAAG TCCAATCGCG TCTATGATCC ACGCCTTAGT GGTACTAATT GGCCTCGTGG CTCTCGCAGG GATTTTAGCC TATTTACCCA TGTCGGCGAT GGCCGCATTA TTACTGGTAG TGGCTTGGAA TATGAGTGAA GCACCAAAAG CAGTGCATTT ACTCAAAACA GCCCCCACCA GCGACATATT GGTGTTTTTA AGCTGTTTTT CACTCACGGT GATTTTCGAT ATGGTGATCG CCATCAGTGT GGGGATTATT TTAGCTGCGC TGCTGTTTAT GAAAGAAATC GCGGAGATGA CCAAGCTTTA TGATATAAGC AGTAACAAAC GCTATGTTGA TCAATCTCTG CCCGCTGACT GGGCCGTGCT CAAAATTAAT GGTCCATTAT TTTTTGCCGC GGCCGATCGC ATTTTTGCCG AGATAGCCAG CCTCACTCAA GATAAACAAG TGATTGTACT TTACTTAGAT GGGGTATCAA TTCTGGATGC AGGCGGCCTT GCTGCGCTCA GTAAACTAAT TGAAAAATGT AAACTTAATC AAACCAAGTT GCTCATTACC GATCTGCAGT TCCAGCCCAT CCGTACCTTA GCAAAAGCTA AAATTCAGCC TGTTGAGGGG GTATTAAAGT TTTATCCTAC TCTGCGTGAG GCCCTGACCG AGGCACCATC ACCCGAGTTA GAGGCAACTC CAGAAGCCAC CGATTAA
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Protein sequence | MDPHVSHSAH LFSLRIAHAL NEACVKDRYS FKRFGQDLLA GLTVGIIAIP LAMALAIASG VPPQYGLYTA IVGGFIIAMT GGSRYSVSGP TAAFVVLLYP IAQQFGLAGL LIATVMSGMM LVAMAMLRLG RLILYIPESV TLGFTAGIGV VIATLQLKDF FGLQIEHMPE QYFAKLMALG QALPSLHLPS LFIAAATLAT MLLWPRLKIP VPAHLPAIAL GSILALILNA MGAEIETIGT RFHYQLTDGG IGSGIPAVLP HFEWPWLQTG PNGQAFEFNL AAFQALLPAA FAIAMLGAIE SLLCAVVLDG MTGKRHSANS ELLGQGIGNI IAPFFGGIPA TAAIARSAAN VKAGAQSPIA SMIHALVVLI GLVALAGILA YLPMSAMAAL LLVVAWNMSE APKAVHLLKT APTSDILVFL SCFSLTVIFD MVIAISVGII LAALLFMKEI AEMTKLYDIS SNKRYVDQSL PADWAVLKIN GPLFFAAADR IFAEIASLTQ DKQVIVLYLD GVSILDAGGL AALSKLIEKC KLNQTKLLIT DLQFQPIRTL AKAKIQPVEG VLKFYPTLRE ALTEAPSPEL EATPEATD
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