Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SO_3438 |
Symbol | ispD |
ID | 1171113 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella oneidensis MR-1 |
Kingdom | Bacteria |
Replicon accession | NC_004347 |
Strand | - |
Start bp | 3582325 |
End bp | 3583074 |
Gene Length | 750 bp |
Protein Length | 249 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 637345247 |
Product | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase |
Protein accession | NP_718991 |
Protein GI | 24374948 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG1211] 4-diphosphocytidyl-2-methyl-D-erithritol synthase |
TIGRFAM ID | [TIGR00453] 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGATATCG TCTTAGAAGC CACGTCGCAA ACCGAAACAC AAGTTGCTGT TCAACTTGAA CCTTTATCGT CCAATGTGGT GGCTATTGTT CCCGCCGCAG GGATTGGTAG TCGCATGGGG GCTGGTAAAC CCAAGCAATA TTTACCTTTA TTGGGCCAAA GCATTTTGGC GCATACGTTA GACAAATTAT TGTCCCATCC GCTAATTAGC CAAGTGATTG TTGCGCTGCA TCCAGAGGAT GCTGACTTTT ATGCATTACC TCAGGCCAAG CATCCTAAAC TCAAAACTGT GATTGGCGGT TCTGAGCGCG CCAACTCAGT ACTCGCGGCC CTTGATAAGG CGCCTGACAA TAGCTGGGCT TTAGTTCACG ATGCGGCAAG ACCCTGCTTG ATGGCGAGTG ATATTGATAA ATTGCTGACA TCGAGGGTGC AATTTCCCCA AGGGGCGATT TTGGCCATGC CAGTGCGAGA TACTATGAAG CGCGCCAATA GCTTAGGTGA AATCAACTCG ACCGTGTGCC GCGATAATCT CTGGCATGCA TTGACGCCGC AATTGTTTCC AACGTCACTA TTGCGATTAC ATCTACAGGG CGCACTAAAC GCCGGCGCTG TGGTAACCGA TGAAGCCTCG GCAATGGAAT GGGCTGGCAT TTCTCCCGGA TTGGTTGCTG GACGGGCGGA TAATATCAAA GTCACTCATC CCGATGATTT AGAATTGGCA GAGCTTTTTT TAATGCGCGC TAAGGCTTGA
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Protein sequence | MDIVLEATSQ TETQVAVQLE PLSSNVVAIV PAAGIGSRMG AGKPKQYLPL LGQSILAHTL DKLLSHPLIS QVIVALHPED ADFYALPQAK HPKLKTVIGG SERANSVLAA LDKAPDNSWA LVHDAARPCL MASDIDKLLT SRVQFPQGAI LAMPVRDTMK RANSLGEINS TVCRDNLWHA LTPQLFPTSL LRLHLQGALN AGAVVTDEAS AMEWAGISPG LVAGRADNIK VTHPDDLELA ELFLMRAKA
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