| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_3391 |
|---|
| Symbol | |
|---|
| ID | 1171069 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella oneidensis MR-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004347 |
|---|
| Strand | + |
|---|
| Start bp | 3530959 |
|---|
| End bp | 3533379 |
|---|
| Gene Length | 2421 bp |
|---|
| Protein Length | 806 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 637345196 |
|---|
| Product | ATP-dependent protease, putative |
|---|
| Protein accession | NP_718945 |
|---|
| Protein GI | 24374902 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG1067] Predicted ATP-dependent protease |
|---|
| TIGRFAM ID | [TIGR00764] lon-related putative ATP-dependent protease |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCTACCG TGCCTACAGT CGTACCCGCC ATCCCATTAA CGAGTCAGCA GATTTATCGA
AGGTCCGAAC TTCAACAGCT TAGTGCTGAA TGCCACTCTA CTGCCCAGCT CACGCCACTT
GATGATATTG TCGGTCAAGA ACGCGCCCAG CAGGCGGTAG AATTTGCCAT GGGGATCAAA
GAAAAGGGCT ATAACATTTA CGCTATCGGA CAAAATGGTC TCGGTAAACG CACCATGATG
TTGCGCTATC TCAATCGCCA TGATCCGATT GAACCCGCGT TATTTGACTG GTGCTATGTG
GTGAACTTTG ACGATACCCG TAGCCCCAAA GTATTAAAAC TCACCGCAGG TACGGGGCTA
GAATTTAAGA AATCCATCGA AAAACTTATG CTCAAATTGG TGAGGGCATT ACCCTTAGCC
TTTGATAACG AAATGTATTA TGCAAGGGCA GAAAAACTCA AAAGCCAACT GACACAAAAA
CAAGAAGCCG TACTCACAGA GTTAAGTGAA GAAGCAAAAC AAAAAAACAT TAGTCTGAGT
TTAACCATGC AGGGGGATTA TCAAATGATC GCCCTCAACG GTGACGAGCC CCATGATGAA
GCCACTTTCA GCGCCCTCAC TGAAGCCGAG CGTAATCAAT TTGAAAGTAA TATCAATGGG
CTAGAAGTAA AACTAAGAAG CATTATCCGC CAAAATACCG AATGGGAAGA AGAGTTTAGT
GATACCCAGC AGGAACACGA TGAACAAGTT GCTAAGGATG TGTTGGTACA CTTTTTTAAA
CCTTTGAAGG ATAAATACAA ACACCAACCT GATGTCAGAG CATTTTTAAC CGGCATGCAG
GCAGATATCC TAAGTAATTT AGATATTTTC CTTGAAGAAA GTGAAGAACA ACTCGCCCTT
GCCTACGCCT CACTTGAAAA GAAAATGCCC CGCCGTTATC AGGTCAATGT ACTTGTGAGC
CAAGGCGAGC AGAAATACCC CATCGTCGTA GAAGAAAGCC CTAGCTACCA CAGCCTGTTT
GGTTATGTTG AAAACGCCAC CTTTAGAGGC ACAGTGTTTA CCGACTTCTC ATTGATCCGC
CCTGGTAGCT TACACAAGGC AAACGGCGGC GTACTGTTAA TGGACGCCAT AAAAGTGCTT
GAACGCCCCT ATGTTTGGGA TGGTTTAAAG CGAGCATTAC GCTCTCGCAA GTTGGATCTG
AGTTCATTAG AGCGGGAAGT CTCACTGTCG GGCACCATTT CATTAGCACC GGAACCGATC
CCGCTGGATG TAAAAATCAT CCTATTTGGT GACCATGAAA CCTATCAACT ATTACAGCAT
TATGATGCTG ATTTCATTGA ACTATTTAGG GTAACTGCCG ACTTTGAAGA TGTCATGGAC
AGAAGTGACG CCTCCGAAGC CCACTACGCC CGATTTATTT CCAGTATCGT CCACGATAAC
AACATGTTGC ACTGCGACCG CAGCGCCATT GCACGCATCA TTGAATACAG CTCACGTGAG
GCGCAGGATC AACAAAAGCT CTCGCTCCAC TCCGCCAATA TTGCCAACCT ATTACGGGAA
TCAAACTTTT GCGCTAAAGC CGTATCAAGT AAGCGAATTG AAAAACAACA TGTTGAACAA
GCGCTAAAAA ATCAACAGAA GCGCGTCTCC CGTCTACACG ACAATATTAT GGAAAGCTTT
GTTAATGGCA CGACGCTAAT CAATACTCAC GATAAAGTCG TTGGTCAAAT CAATGCATTA
TCTGTTGTTT CCACTTCAGA ACATCAATTT GGTCTGCCTA ATCGTATCAC TGCCACGACT
GCTTATGGCA AGGGGGAAGT CCTGGATATC GAACACAGGG TCAAACTTGG TGGGCGTATT
CATTCTAAGG GCGTACTGAT CCTCACCGCC TATTTAGCCT CGGTGTTAGG TAAAACCGCG
CAAATTCCCC TCACCACTTA CCTCACCTTC GAGCAATCCT ACAGCGGTGT CGATGGTGAT
AGTGCTTCAA TGGCCGAATG CTGTGCCATT ATCTCGGCCA TCAGTGAGTT GCCCTTAAGA
CAAGATATTG CCATTACTGG CTCAATGAAT CAGTTTGGTG AGGCTCAACC TATCGGCGGC
GTTAATGAGA AAATTGAAGG CTTTTTCGAT GTGTGTCAAA TCAAGGGCAG AACCTCGAGT
CAAGGGGTGA TTATTCCCGA GTCGAATATC GCTAACTTAA TGTTACGCCA AGATATTGTT
GAAGCAGTTG AACGTGGTGA ATTCCATATT TGGGCGATTA ACCATGTCAC TCAAGCGATG
ACCTTGCTAT TAGGTAAAAC CGCAGCAACA GTACAAACCA ATGAGAGTAA ACACATAGAT
CAATATGCAC CGGAGTGCAT TTTTGGCATT GCCCAGCAAA AACTTAATGC CTTAAGAGCA
CTCAGTAAAA CCAATTCATA G
|
|---|
| Protein sequence | MPTVPTVVPA IPLTSQQIYR RSELQQLSAE CHSTAQLTPL DDIVGQERAQ QAVEFAMGIK
EKGYNIYAIG QNGLGKRTMM LRYLNRHDPI EPALFDWCYV VNFDDTRSPK VLKLTAGTGL
EFKKSIEKLM LKLVRALPLA FDNEMYYARA EKLKSQLTQK QEAVLTELSE EAKQKNISLS
LTMQGDYQMI ALNGDEPHDE ATFSALTEAE RNQFESNING LEVKLRSIIR QNTEWEEEFS
DTQQEHDEQV AKDVLVHFFK PLKDKYKHQP DVRAFLTGMQ ADILSNLDIF LEESEEQLAL
AYASLEKKMP RRYQVNVLVS QGEQKYPIVV EESPSYHSLF GYVENATFRG TVFTDFSLIR
PGSLHKANGG VLLMDAIKVL ERPYVWDGLK RALRSRKLDL SSLEREVSLS GTISLAPEPI
PLDVKIILFG DHETYQLLQH YDADFIELFR VTADFEDVMD RSDASEAHYA RFISSIVHDN
NMLHCDRSAI ARIIEYSSRE AQDQQKLSLH SANIANLLRE SNFCAKAVSS KRIEKQHVEQ
ALKNQQKRVS RLHDNIMESF VNGTTLINTH DKVVGQINAL SVVSTSEHQF GLPNRITATT
AYGKGEVLDI EHRVKLGGRI HSKGVLILTA YLASVLGKTA QIPLTTYLTF EQSYSGVDGD
SASMAECCAI ISAISELPLR QDIAITGSMN QFGEAQPIGG VNEKIEGFFD VCQIKGRTSS
QGVIIPESNI ANLMLRQDIV EAVERGEFHI WAINHVTQAM TLLLGKTAAT VQTNESKHID
QYAPECIFGI AQQKLNALRA LSKTNS
|
|---|
| |