Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SO_3384 |
Symbol | phrB |
ID | 1171062 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella oneidensis MR-1 |
Kingdom | Bacteria |
Replicon accession | NC_004347 |
Strand | - |
Start bp | 3521990 |
End bp | 3523528 |
Gene Length | 1539 bp |
Protein Length | 512 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 637345189 |
Product | deoxyribodipyrimidine photolyase |
Protein accession | NP_718938 |
Protein GI | 24374895 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0415] Deoxyribodipyrimidine photolyase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGCGTTA ATCAAAACAG GTCGGGGAAA CATGCATTAA TGTGGTTTCG GCAAGATCTG CGCCTTACCG ATAATCAAGC GTTTACGGCC GCCTGTGATT GGGTAAGGCA ACATCATGCC GCCAAGCTTA AAGCGATTTA CATCGCCACC CCAAGTCAAT GGCATCAGCA TGATATCGCG CCAATTCAAC TCGACTTTAT TCAGCGGCAT GTGAATCTAC TGGCCCAAGG ACTGGTGAGC TTAGGGGTTG AATTTGAACT CATTCAACTC GATAGCTTTA GAGATATTCC CGCATTTTTA ACGAGTTATT GTGAAGAGCA TAGTATTGGA CGGGTATTTG CAGGACAAGA ACCTGAGATC AATGAGCAAA AGCGCGATCA AGCTTGTGTT GAAGCGGGAA TTCCTTTGTC ACTTAGTGAT GAACATTGCT TATTACCACC GGGAACCGTG CTTAATTTAA GTGGTGACAT GTATCGGGTG TTCACTCCTT TTAGTCGCAA GTGGCGAGAG GTTGCCGCAA AACAGGCCAT TTTGCCGCTA GGTGTGCCCG CGCCGCTAGG CTCTATCTTG TCTGAGCCTA AGCCATTATT TTTTAAAAAT ATCGGGTCGA CTTATTTAGC TGCGAGTAAG GACATTGCGT CATCTAAAAA AGGCTTCAAT CAAACCGCAC CAAATCCGCT TATCTCGAGT GAGCAGTGGG CGGCAGGTGA AGGGCAAGCC AAGCGGCTGC TTAATCAATT TATTCAGCAA AAAGTGCAAG ACTATAAGCA AGATAGAGAT TTCCCCGCCA TTGATGGCAC CAGTGTTATC TCCCCTTATT TGGCGATTGG CGTACTCAGC CCAAGGCAAT GTGTCGCGGC GCTATTACAA CGTTTCCCTG AAGTCATTGT TGATGACACA AGCCCAGGGC GAACATGGCT AAATGAGCTG ATTTGGCGGG AGTTCTACCG TCATTTGCTG GTGGCTTTTC CTGATTTATC AAAGGGAAAC AACTTTAATC GCCAAGCCGA TCATGTGCTG TGGCGTAATA ATCAAAGTGA GTTTTTAGCT TGGTGTGAGG GCAAAACAGG CTATCCGATA GTGGATGCGG CCATGCGGCA ACTTAATCAA ACGGGCTGGA TGCATAATCG TCTGCGTATG GTGGTGGCGA GCTTTTTAAC CAAACACTTG CTTATTGATT GGCGTTGGGG GGAGCGGTAT TTCCGCCAGC ATCTTATCGA CGGCGATCTG GCGGCTAACA ACGGTGGCTG GCAGTGGTCA GCTGGATGCG GTTGTGATGC GCAGCCGTAC TTTCGGATTT TTAATCCTAT GAGCCAGAGC GAAAAGTTTG ATCCAGATGG CCGCTTTATT CGTAAGTACT TACCAGAACT CGCATCTTGG GGCGTGACGC GATTGCACCA ACCCAATCAG CAAAAAATGC CTTCGTTGTT TGAAGCACCG TTATTTGCAT CGCAAGCGGA TTATCCCAAT GCGATTGTTG AGCACAATGC AGCAAGGGCA AGGGCGCTGA CGGTACTAGG TGTGCTGAAA AAGGCTTAG
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Protein sequence | MSVNQNRSGK HALMWFRQDL RLTDNQAFTA ACDWVRQHHA AKLKAIYIAT PSQWHQHDIA PIQLDFIQRH VNLLAQGLVS LGVEFELIQL DSFRDIPAFL TSYCEEHSIG RVFAGQEPEI NEQKRDQACV EAGIPLSLSD EHCLLPPGTV LNLSGDMYRV FTPFSRKWRE VAAKQAILPL GVPAPLGSIL SEPKPLFFKN IGSTYLAASK DIASSKKGFN QTAPNPLISS EQWAAGEGQA KRLLNQFIQQ KVQDYKQDRD FPAIDGTSVI SPYLAIGVLS PRQCVAALLQ RFPEVIVDDT SPGRTWLNEL IWREFYRHLL VAFPDLSKGN NFNRQADHVL WRNNQSEFLA WCEGKTGYPI VDAAMRQLNQ TGWMHNRLRM VVASFLTKHL LIDWRWGERY FRQHLIDGDL AANNGGWQWS AGCGCDAQPY FRIFNPMSQS EKFDPDGRFI RKYLPELASW GVTRLHQPNQ QKMPSLFEAP LFASQADYPN AIVEHNAARA RALTVLGVLK KA
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