Gene SO_3351 details

Gene Information

• Locus tag: SO_3351
• Symbol: pilT
• ID: 1171033
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella oneidensis MR-1
• Kingdom: Bacteria
• Replicon accession: NC_004347
• Strand: -
• Start bp: 3495991
• End bp: 3497028
• Gene Length: 1038 bp
• Protein Length: 345 aa
• Translation table: 11
• GC content: 46%
• IMG OID: 637345156
• Product: twitching motility protein PilT
• Protein accession: NP_718905
• Protein GI: 24374862
• COG category: [N] Cell motility; [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG2805] Tfp pilus assembly protein, pilus retraction ATPase PilT
• TIGRFAM ID: [TIGR01420] pilus retraction protein PilT

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGAAATCA CTGAGTTATT AGCCTTTAGT GTAAAACACA AAGCCTCGGA TCTACACCTC 
TCTGCAGGGA TATCTCCCAT GATCCGTGTC GACGGTGAAG TGAGAAAAAT CAATCTGCCC 
GCGCTCGATC ATCAGGGTGT ACACAGCCTT GTGTACGACA TTATGAATGA TAAACAGCGT 
AAGGACTTTG AAGAACATTT AGAAATCGAC TTTTCCTTTG AAGTCCCTAA CTTAGCGCGT 
TTCCGTGTGA ACGCCTTTAA CCAATCTCGA GGTGCAGCTG CGGTATTTCG TACCATTCCA 
AGTGATATTT TGTCACTCGA GCAGTTAGGC GCCCCTGAAA TTTTTAAAAA AATCTCCAGT 
TTTCCCCGTG GCTTAGTGTT AGTCACTGGA CCAACTGGTT CGGGTAAGAG TACCACACTT 
GCGGCCATGG TGGATTACAT CAATGAAAAC CGTCATGATC ATATCCTAAC CATTGAAGAT 
CCAATTGAAT TCGTTCATCA AAATAAGCAA TGTTTGATTA ACCAACGGGA AGTGCATCGT 
CATACCCACA GTTTTAACGC CGCATTGAGA AGTGCGTTGC GTGAAGACCC TGACGTCATC 
CTCGTCGGCG AGATGCGTGA CCTTGAAACC ATTCGACTTG CGATGACCGC GGCCGAAACG 
GGTCACTTAG TATTCGGTAC CTTGCATACC ACCTCGGCAG CTAAGACTAT CGACCGTGTG 
GTTGACGTTT TCCCCGCTGG CGAAAAAGAC ATGGTACGTA CCATGTTATC GGAATCATTA 
CAGGCTGTTA TCTCGCAAAC TCTGATTAAG AAAATCGGCG GTGGTCGTGT TGCTGCCCAC 
GAAATTATGA TGGGTACGCC CGCTATCCGT AACCTTATCC GTGAAGATAA AGTGGCGCAA 
ATGTACTCTG CTATCCAAAC GGGGATGGCC CATGGTATGC AAACTCTTGA ACAGTGTCTG 
CAAAACTTAG TTAACCGTGG CCTCATTACC CGAGAAGATG CCATGGCGAA AAGTTCAAAC 
AAACAAGCGA CGTTTTAA 

 

Protein sequence

MEITELLAFS VKHKASDLHL SAGISPMIRV DGEVRKINLP ALDHQGVHSL VYDIMNDKQR 
KDFEEHLEID FSFEVPNLAR FRVNAFNQSR GAAAVFRTIP SDILSLEQLG APEIFKKISS 
FPRGLVLVTG PTGSGKSTTL AAMVDYINEN RHDHILTIED PIEFVHQNKQ CLINQREVHR 
HTHSFNAALR SALREDPDVI LVGEMRDLET IRLAMTAAET GHLVFGTLHT TSAAKTIDRV 
VDVFPAGEKD MVRTMLSESL QAVISQTLIK KIGGGRVAAH EIMMGTPAIR NLIREDKVAQ 
MYSAIQTGMA HGMQTLEQCL QNLVNRGLIT REDAMAKSSN KQATF