Gene SO_3194.1 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSO_3194.1 
Symbol 
ID1170888 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella oneidensis MR-1 
KingdomBacteria 
Replicon accessionNC_004347 
Strand
Start bp3335712 
End bp3336686 
Gene Length975 bp 
Protein Length324 aa 
Translation table11 
GC content45% 
IMG OID637345011 
Productpeptide transporter 
Protein accessionNP_783516 
Protein GI28275261 
COG category[E] Amino acid transport and metabolism 
COG ID[COG3104] Dipeptide/tripeptide permease 
TIGRFAM ID[TIGR00924] amino acid/peptide transporter (Peptide:H+ symporter), bacterial 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGCGTAG CAAAACCACA AGGGACAATG CTTGGCCATC CCAAGGGGCT GTTCCTTCTG 
TTTACGACAG AACTCTGGGA ACGTTTTAGT TATTATGCAA TGCGTGCCAT TTTGGTGCTG
TATTTGGTGG ACCAAGTTGG CAAGCAAGGC GGAGGGTTAG GTTGGACCCA AGCCGACGCG
CTGTCACTCT ATGGTACCTT CACGGCTTTA GTTTACTTAA CTCCACTTAT CGGTGGCTGG
TTAGCTGATA ATTTTCTGGG TCAACGTAAA GCTATCTATT TTGGCGGCGC TTTAATGGCA
ACAGGCCAGT TTATGCTAGC CGCACCGCAT GCATGGTTTC CTGGTATTGA AACGACTGTT
TTCTATATCG GCTTAGGAAC ACTGATTTTG GGTAACGGTT TATTCAAACC AAATATCTCT
ACTATGGTGG GTGATCTGTA TGAGGAAGGT GACCATAGAC GCGATGGTGC GTTTACCATC
TTCTATATGG GGATTAACTT AGGAGCGGCA TTATCTGGCT TCGTTGTTGC TTGGGCCTAT
ACCAGCTTTG GTCATGCTGA AGTTATCAAT GGTAAAGAAG TATTTATCAA TAACTGGCAA
GCAGGTTTCT TCTGTGCCGG GATTGGTATG CTACTTTCCT TGGTTATCCA GTTTTTGTTT
GCACAAAAAT TACTGGGTGA TATTGGTACT GTGCCAGCGG CTAGGCTTGA GCGTGAGCGC
CAAGCTAAAT TAGGCAATGT TCGCAAAGAA CCCCTTACGA AAGTTGAACG TGACCGTATT
AAGGTCATCA TGGTACTTGG TTTGTTTACC ATCATCTTCT GGGCTGGTTT CGAACAAGCT
GGCGGCTTAA TGAATTTATT TACCAATGAA TTCACTGACC GTTACATTGG CACATGGGAA
GTACCAACAA CTTACTTCCA ATCACTTAAC GCCATTTTCA TTGTGTTATT TGCTCCTGTT
GTTGCCTCTA TTTGA
 
Protein sequence
MSVAKPQGTM LGHPKGLFLL FTTELWERFS YYAMRAILVL YLVDQVGKQG GGLGWTQADA 
LSLYGTFTAL VYLTPLIGGW LADNFLGQRK AIYFGGALMA TGQFMLAAPH AWFPGIETTV
FYIGLGTLIL GNGLFKPNIS TMVGDLYEEG DHRRDGAFTI FYMGINLGAA LSGFVVAWAY
TSFGHAEVIN GKEVFINNWQ AGFFCAGIGM LLSLVIQFLF AQKLLGDIGT VPAARLERER
QAKLGNVRKE PLTKVERDRI KVIMVLGLFT IIFWAGFEQA GGLMNLFTNE FTDRYIGTWE
VPTTYFQSLN AIFIVLFAPV VASI