| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_3110 |
|---|
| Symbol | secF |
|---|
| ID | 1170799 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella oneidensis MR-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004347 |
|---|
| Strand | - |
|---|
| Start bp | 3238529 |
|---|
| End bp | 3239476 |
|---|
| Gene Length | 948 bp |
|---|
| Protein Length | 315 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 637344915 |
|---|
| Product | preprotein translocase subunit SecF |
|---|
| Protein accession | NP_718672 |
|---|
| Protein GI | 24374629 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0341] Preprotein translocase subunit SecF |
|---|
| TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR00966] protein-export membrane protein SecF |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTAGAGA TTTTATCTTT AAAACGGACG GTAAACTTCC TTAAGCATGC CTTGCCGGTC
AGTATTATGT CAGCCGTTCT TGTGCTTGGC TCCATCGTGC TATTGGCGAC TAAAGGCTTG
AATTGGGGAC TGGATTTTAC AGGTGGTACA GTGGTGGAAA TGTCATTTTC GACCCCTGTC
GACTTAAACC AGTTTCGTTC ACAACTAACA ACACCTGAAA CCAGTAGTGC CGTGGTGCAA
AATTACGGTT CGAGCCGTGA TGTTTTAGTG CGCCTCCCGG TCAAAGAAGG TATCAGTAGT
GATGTCCAAG TGGTGGAGAT TGTTAAATTT GCCCAGCAAC TAGATCCTAA TGTTGTGCAA
AAACGAGTTG AGTTTGTTGG CCCACAAGTG GGTAAAGAAC TTGCCGAACA AGGCGGTTTA
GCAGTTCTGG TTGCATTAAT CTGCATCATG ATCTATATCG CATTTCGCTT TGAGTGGCGC
CTTGCCACCG GTGCAGTTGC GGCGTTAGCC CATGACGTGA TGGTAACTTT AGGCGTATTT
TCACTCACGC AAATGGAGTT TGATTTAACC GTGTTAGCAG GGGTATTAAC AGTGGTTGGT
TACTCCCTAA ACGATACCAT TGTGGTATTT GATAGGGTGC GTGAAAACTT CTTGAAAATG
AGAAAAAGTG AGCCAGAAGA AGTGGTTAAC GTCTCTATTA CCCAAACTAT GAGTCGAACC
ATCATTACTA TGGGAACCAC TTTAGTCGTA GTGGTGGCGC TGTTCTTAAG CGGTGGTTCC
ATGATCCACG GCTTTGCGGC CGCGCTATTA CTTGGGATAA GTGTGGGGAC TTACTCTTCA
GTTTATGTAG CGACCTATTT AGCCATTAAA CTTGGGGTGA ATCGCGAGTC GATGATGCCA
GCTGAGATAG AAAAAGAAGG CGCTGATCAA CCATCAATGA TGCCGTAA
|
|---|
| Protein sequence | MLEILSLKRT VNFLKHALPV SIMSAVLVLG SIVLLATKGL NWGLDFTGGT VVEMSFSTPV
DLNQFRSQLT TPETSSAVVQ NYGSSRDVLV RLPVKEGISS DVQVVEIVKF AQQLDPNVVQ
KRVEFVGPQV GKELAEQGGL AVLVALICIM IYIAFRFEWR LATGAVAALA HDVMVTLGVF
SLTQMEFDLT VLAGVLTVVG YSLNDTIVVF DRVRENFLKM RKSEPEEVVN VSITQTMSRT
IITMGTTLVV VVALFLSGGS MIHGFAAALL LGISVGTYSS VYVATYLAIK LGVNRESMMP
AEIEKEGADQ PSMMP
|
|---|
| |