Gene SO_3108 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSO_3108 
Symbol 
ID1170797 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella oneidensis MR-1 
KingdomBacteria 
Replicon accessionNC_004347 
Strand- 
Start bp3236703 
End bp3237614 
Gene Length912 bp 
Protein Length303 aa 
Translation table11 
GC content47% 
IMG OID637344913 
Productsiroheme synthase, N-terminal component, putative 
Protein accessionNP_718670 
Protein GI24374627 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG1648] Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) 
TIGRFAM ID[TIGR01470] siroheme synthase, N-terminal domain 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCAATATT TCCCGTTATT TATTGATACC GTTAATCTCA ATGTCCTACT TGTTGGGGCT 
GGGGATGTCG CGAGTCGTAA ACTCGCTTTG TTGACGCGTA CCGAAGCGAA TATCCATGTT 
ATTGCGCCAG AGGTGAATAC AGAGGTGCAA GCCTATGCTG ATAAAGGGCG AATATTATTG 
TCTCAACGGT CCGTCGTACA GGCGGACATT CAAAATTACG ATCTTATTTA TCTCGCAACG 
GCTGACGATA AACTCAATAG TGAATTAGCA ACCTTAGCCA CAGAACGTGG AATTTGGGTC 
AATGCCGTTG ATAATCCTGC TTTTTGTCGT TTTATCACCC CATCCATAGT GGATAGAGGG 
CGCCTTGTGG TGGCGATCAG CACCGCGGGG GCCGCGCCTG TGTTTGCCCG AACCATTAGA 
TCAAGGTTAG AAACCAGCCT GCCACAATCC CTAAAACCCT TATTTGATTT CGTGGCGGAT 
AAACGCATCG AAGTGCAACA AAGACTGACC AAAACTGCCA CCCGTCGGTT ATTTTGGGAA 
CGATTTTTCG ATACTAATGG CGATAGGTTT GACGCGCGCA CGCTAGAACA TTATCAAAAT 
GCCTTTAATC ATATCGTCAG CCGCGGAGAA ATCTTATTAC TGGATGAGGC TACTCCAGTC 
GAATTATTGC CGCTGGCGGC CATGCCCTTA TTGCAACGCC TTGATTGGAT TTACAGCCAA 
GAGAGCCTAA CGAATGAATT GTCAGAATTT GTTCGCCGTG ATGCTAACCG AGGCGGATTA 
CCAACGCTGA GTGAAATTAG CCATGAATAT GAGCAGGGCA CAAGGATGCT GATTGTTGCA 
GATACGCAAA AAATTAATCA GCTAAAGGCG CACTTCCCAG TTGCGAAGCA TTTGCGCCCT 
GGTGCGATTT AA
 
Protein sequence
MQYFPLFIDT VNLNVLLVGA GDVASRKLAL LTRTEANIHV IAPEVNTEVQ AYADKGRILL 
SQRSVVQADI QNYDLIYLAT ADDKLNSELA TLATERGIWV NAVDNPAFCR FITPSIVDRG 
RLVVAISTAG AAPVFARTIR SRLETSLPQS LKPLFDFVAD KRIEVQQRLT KTATRRLFWE 
RFFDTNGDRF DARTLEHYQN AFNHIVSRGE ILLLDEATPV ELLPLAAMPL LQRLDWIYSQ 
ESLTNELSEF VRRDANRGGL PTLSEISHEY EQGTRMLIVA DTQKINQLKA HFPVAKHLRP 
GAI