| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_3084 |
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| Symbol | |
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| ID | 1170770 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella oneidensis MR-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004347 |
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| Strand | + |
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| Start bp | 3205035 |
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| End bp | 3209303 |
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| Gene Length | 4269 bp |
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| Protein Length | 1422 aa |
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| Translation table | 11 |
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| GC content | 35% |
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| IMG OID | 637344887 |
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| Product | sensory box protein |
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| Protein accession | NP_718647 |
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| Protein GI | 24374604 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCGAAAG TACTCTTAAA AATTTTCATC TACAGTTGCC TATGCCTAAG CACCTTGTAT
CCATCAGATT CTATTGCAAT ATATTCTAAG GAGCTCGACT CATCCATAGT TTTGAATTCA
AACCTATTTG GAGTTCCGCA AGGTCTTTCA CAAGGAACAG TAACCTCGAT TGTTCAAGAT
AATGATGGAT ACCTATGGAT AGGTACATTT AATGGTCTTA ATCGCTTTGA TGGAAGCAAC
TTCAAATATT TTTTCGCTGA TGGAACAAAT TCAGGACTCC CTAGCTCTTT TATTCGAAGT
TTACAAATTG ATAAGAATGG CATTCTATAT GTAGGAACTG ACAATGGCCT AGCTGTATAT
GATAAGAACA ACGATTCCTT CATTAAATAC GGAGCACCAC TAGACAACAC TCCAATCTGG
AGTATAAATA CCACTATTGA AACCTTAATT GTTGGCACCA ACAACGCAAT CATTGACATC
CATGGAAAAG AGAACCATCT AGACCTATCG TCTAAAGGGA TTGGTGAAAT AAAAAAATCT
ATCAAAATTG GTGATGATTA TTTTTTAAAG GATTACTCCG GAAAATTATT TAAAATAAAT
CAAGAAAGTT CAATCTTAAT AAAAGAAAAC ATTATCGACA TTGAACAAAA AAACAATAAA
TCTCTAATTA TATCCACAAA AGATGGACTT TTTGAATATG ATGGCGTTTT GATAAATAGA
ATTGACAACC GTTCTTTTTC ACAGCTTGCA AAGAACAATA ACACCATCTA TGGCATCTCT
GAAAACTACA TTATTGACAT CAACAATAAA AAAACGATAG GACTAATTTC AGCATTCAAC
CCAGATAAAA CCACCGTTTT TTATGCCAAC AATAACTTTT TTACACTAGG AAGTGTAGAT
CAAGGTTTTT TTATCATAAA AAAACAAAAT AACTTAGTCA AAAAAACCTC TCTAACAACT
AATAGCACTT GGCATTTAAG TAAAAACTCT CAAGGTTTTC TAGTTTCATC AGAAGCTGAA
AAAATAACCT TATTCAACAA TGAATTCAAA AAAATTAGAG ATTACAACAC ATATACCACA
GGATATAAAT ATGCATTACT CCATAAAAAC CAGCTTTTAT ATGGAACAAG TAATGGATTG
TTTTTGGATA ATAGTAATTC TGTAAAAAAA CTTAGCAATG AAACCATATC AGCATTGTCA
AGTAATGAAG ATGATTCTAT TTTATCAGCT GGAACCCCCG ATGGTAAAAT CTTAATAATA
AAAAACTCAG AAATAATAAA AACTTTTAAC ACAGAAAGGA AGGAACCTAT TTTTGATATT
GAAACCATAT CAGAAAACTT GTTTTATATA GCCAGTCAGG GAGGACTTAG AAAGTATGAC
AACGGTCAGG AAACACTTAT AAGCGAGCAA CTGACATATA GTATTCAAAA AGATAGAAAT
TATTTATTAT TCGGCACATC AAAAGCCTTA ATGCGTTATG ATATAACTAA TGAAAAAATA
GACACCTTAT TCTCAAAAAA TAAAGAAATC TACTCAATTG CAAGTGATAC CAACTTTATT
ACTGTTTCAT CATTAGGAGA GGTAATTATT TTTGATAAGA ATAGTAAAAC TTCTTATGCG
CTGGGAACAT CAAATGGGAG TCAATATGAA TACAACTCAC CTAGCGCAAT AAAAATTAAT
GATTTTATAT TGTTGGCAGG AATTAACGGG GTAAGCTTAG TATCTCCACA AGAAATTTCT
GATTATATAA AAAGTCAAAA AGCAAACAAA ACAGAAATAT CTAAATTTTC CGTTTTCAAC
ATGAGTCAAG AAAAAAATGG AAAGTATTTA AAAAAACCAA TCGATGTAAC AAAAGAAATA
ACACTTAAAT ATTCAGACTA TCCATTTTCT TTTGATTTCA TATCTCCTAT GTCTGATGAA
TCATCTACTA ACTACTACTA CAGAATGCTA GGGTTGTCTG ATACTTGGAT TTACTCTAAT
GGAACAAACT CCGCAACCTA TACCAACCTA TCTCCTGGCG AATACGTATT TCAGGTTTAC
ACCATAAATA ATCTTTCAGG CGAAAAATCA TCTGAGAGAG AAGTTAACGT AATAATTACG
CCTCCTTGGT GGTCATCTAC TCAAGCCAAA ATATTTTATT TTTTAATAAC AATGTTTTTG
TCCCTATTTA TATTCAAAGC AATTCTTCGT AAAAGAGAAA TTCAGCGTCA AATTGCTTTG
AGTGAAGAAC GACTAAAGCT ATCTCTATGG GGCAGCGGTG ATGAAATGTG GGACTGGGAT
ATAGAAACGG GTAATATTTT CCGCTCGAAT ATTTGGGGTG CATTAGAGTT CCCACGAGAT
GGACATCGCT CGGGTAATCG AGATGAAGAA AGTAATATAC ATCCCATGGA TCAAGAACGC
GTTAGAGAAG CACTAAATAA ACACTTCTAT GGTGAGACAG ATCATTTCGA AGCGGCATAT
AGAGTTAAAG GCAAAGATGA TAGTTGGATA TGGATTTTAG ATAGGGCTAA AATTGTAGAA
CGAGATGATA AAGACAACGC TCTACGAATG ACTGGCACTA TTAAAAATAT CAGTCAATTT
AAACAAAAAG AAGAACAATT AAGACTCTTC GAAAAAGCGA TTGAAAATAT TTCTGAAGGT
ATGTTTATTC TTGACAGTGA ATACCGTTTC GTAGAAGTGA ACGAGGCTTG CTGTAGAATA
TCACAACGAA ATAGGTCTGA TTTTATTGGC AATTTACTTA CCTTTGAATT ATATCCTGAA
TCCTTCTCAA ATCAGATTCG TACTATGCTG AAACAGCAAG GTCGATGGGC AAGTGAAGTC
GAAGCAAATC GAGGCGATAA CAGCCATTTT CATATGGAGC TCACGATTGA CGCTATCTAC
GATGAATTAG GTGAATTGTC GCATTATGTG GGTGTTTTCT CTGATATATC AAGACGTAAA
CAGCAGGAAG AAGAACTTCG TAAACTCACC AACAATGATT TATTGACTGG CCTACCCAAC
CGGTCAAACC TACAAGTCAC ATTAGGAAAC TTAGTCAATA AAGAAATTAA TCATGCATTA
ATGGTACTCG ATTTAGATAA TTTTAAGCGT ATCAATGACT CATTAGGTCA CCAAGTTGGT
GATAAATTAC TAAAACTTGT ATCAGTCAGA ATTAAATCTT CTGTACCTAA AAACACCAAC
ATCTATCGTT TAGGAGGAGA TGAGTTTGCC ATTGTTCTCG ATAAAACGTC GGATATTTTA
GCCTCCGCCG CTATTGCGGG ACGAATTGTT GATGCTTTTA ACACTGTATA TGAAATAGAC
AATGAACAAC TTGTCTTAGG TGTGAGTGTT GGAATTGTAC TGTATCCAGA TGATGAGCAG
AATGAGCAAG CCTTACTCAG AAAAGCTGAT ATTGCCATGT ACCATGCAAA ATCTGCAGGC
GGTAACTGTT ACCAATTTTA CTCTGAATCA CTCAATGAAC ATGCAATTAA ACAGCTTGAG
ACCGAAAATC TTATCCGTGA AGGCTTAAAA GAAGATTTAT TTGAAGTTTA TTATCAACCC
AAAGTCGATC TGAAACATGG TCATGTTGCT GGAATGGAAG CTTTAGTCAG ATTAAATCAT
CCAACCTTAG GACTTATTCC ACCGAATGAT TTTATCCCTC TTGCAGAAGA GAATGGTCTG
ATTGTTGAAA TAGGTGAAAT TGTACTCAGA AAGGCCTGTT TTGCCGCGCA GAAGTGGCGT
GAGCAAGGTC TATTTAAGGG CCGAGTCGCC GTCAATTTAT CGTCACGACA ATTTGCCCTA
CCCGATCTAC AACAGCGGAT AGAGTCAATT TTACGACTCA CCCAATTACC TGCCTCTCAT
TTAGAGCTAG AAATAACTGA AGGTACTGTT ATTAAGCAAC CAGAAATGGC TATTACTGTT
ATGCAGCAAT TAGCCAAAAT GGGTGTGAGC CTTGCTTTAG ATGACTTTGG AACGGGTTAT
TCATCGCTTT CTTACTTAAA AAGATTCCCG ATTCATACGC TGAAAATCGA TAAAGCATTT
GTTGACGATA TTGATAAATC CGACCGCGAT TTAAAAATGG TCGATTCCAT TATTACCATC
GCCCACAATA TGGGTCTATC CGTCGTTGGT GAGGGAGTTG AGCAAGCTGC ACAGCTAAAT
ATCCTTCGAG CCCTAAATTG TGAAGAAATA CAAGGTTACA TCTTCAGTAA GGCCATTAAT
GAAGCAGAGT TTACCCTTTT ACTACAGGAG GACCAGGCTA AATCCATCGC GATAAACAAC
ACATTGTAA
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| Protein sequence | MPKVLLKIFI YSCLCLSTLY PSDSIAIYSK ELDSSIVLNS NLFGVPQGLS QGTVTSIVQD
NDGYLWIGTF NGLNRFDGSN FKYFFADGTN SGLPSSFIRS LQIDKNGILY VGTDNGLAVY
DKNNDSFIKY GAPLDNTPIW SINTTIETLI VGTNNAIIDI HGKENHLDLS SKGIGEIKKS
IKIGDDYFLK DYSGKLFKIN QESSILIKEN IIDIEQKNNK SLIISTKDGL FEYDGVLINR
IDNRSFSQLA KNNNTIYGIS ENYIIDINNK KTIGLISAFN PDKTTVFYAN NNFFTLGSVD
QGFFIIKKQN NLVKKTSLTT NSTWHLSKNS QGFLVSSEAE KITLFNNEFK KIRDYNTYTT
GYKYALLHKN QLLYGTSNGL FLDNSNSVKK LSNETISALS SNEDDSILSA GTPDGKILII
KNSEIIKTFN TERKEPIFDI ETISENLFYI ASQGGLRKYD NGQETLISEQ LTYSIQKDRN
YLLFGTSKAL MRYDITNEKI DTLFSKNKEI YSIASDTNFI TVSSLGEVII FDKNSKTSYA
LGTSNGSQYE YNSPSAIKIN DFILLAGING VSLVSPQEIS DYIKSQKANK TEISKFSVFN
MSQEKNGKYL KKPIDVTKEI TLKYSDYPFS FDFISPMSDE SSTNYYYRML GLSDTWIYSN
GTNSATYTNL SPGEYVFQVY TINNLSGEKS SEREVNVIIT PPWWSSTQAK IFYFLITMFL
SLFIFKAILR KREIQRQIAL SEERLKLSLW GSGDEMWDWD IETGNIFRSN IWGALEFPRD
GHRSGNRDEE SNIHPMDQER VREALNKHFY GETDHFEAAY RVKGKDDSWI WILDRAKIVE
RDDKDNALRM TGTIKNISQF KQKEEQLRLF EKAIENISEG MFILDSEYRF VEVNEACCRI
SQRNRSDFIG NLLTFELYPE SFSNQIRTML KQQGRWASEV EANRGDNSHF HMELTIDAIY
DELGELSHYV GVFSDISRRK QQEEELRKLT NNDLLTGLPN RSNLQVTLGN LVNKEINHAL
MVLDLDNFKR INDSLGHQVG DKLLKLVSVR IKSSVPKNTN IYRLGGDEFA IVLDKTSDIL
ASAAIAGRIV DAFNTVYEID NEQLVLGVSV GIVLYPDDEQ NEQALLRKAD IAMYHAKSAG
GNCYQFYSES LNEHAIKQLE TENLIREGLK EDLFEVYYQP KVDLKHGHVA GMEALVRLNH
PTLGLIPPND FIPLAEENGL IVEIGEIVLR KACFAAQKWR EQGLFKGRVA VNLSSRQFAL
PDLQQRIESI LRLTQLPASH LELEITEGTV IKQPEMAITV MQQLAKMGVS LALDDFGTGY
SSLSYLKRFP IHTLKIDKAF VDDIDKSDRD LKMVDSIITI AHNMGLSVVG EGVEQAAQLN
ILRALNCEEI QGYIFSKAIN EAEFTLLLQE DQAKSIAINN TL
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