Gene SO_3080 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSO_3080 
Symbol 
ID1170766 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella oneidensis MR-1 
KingdomBacteria 
Replicon accessionNC_004347 
Strand- 
Start bp3199688 
End bp3200605 
Gene Length918 bp 
Protein Length305 aa 
Translation table11 
GC content47% 
IMG OID637344883 
ProductN5-glutamine S-adenosyl-L-methionine-dependent methyltransferase 
Protein accessionNP_718643 
Protein GI24374600 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG2890] Methylase of polypeptide chain release factors 
TIGRFAM ID[TIGR00536] HemK family putative methylases
[TIGR03533] protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific
[TIGR03534] protein-(glutamine-N5) methyltransferase, release factor-specific 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGACAGAGT TACGCACCAT TGGTGACATG TTGCGTTGGG CGGTGAGCCG CTTTAATGAT 
GCCAATGTGT ACTATGGCCA TGGTACAGAT AATGCGTGGG ATGAGGCGAT AGCCTTAGTG 
TTCCATGCGC TGCACTTGCC CGAAGAAATC GGCCAACAAG TGATTTTAAG TAACTTAACC 
AGCAGCGAAA AACACAAAAT TGTCGAGCTT ATCATTCGCC GCGTTCGTGA ACGTTTGCCT 
GTGCCTTATT TAACCAATAA AGCGCGCTTT GCAGGGCTTG AGTTTTATGT CGATGAACGT 
GTACTTGTGC CTCGTTCACC TATTGCGGAG ATGATCGCCA ATCGCTTTGG CCCTTGGTTA 
TACGGCAAAC CCGTTAACCG TATTTTAGAT TTATGCACTG GCAGTGGTTG TATCGCGATT 
GCCTGCGCCT ACGAATTTGA TGAAGCTGAA GTCGATGCGC TCGATATCAG TGAAGATGCC 
CTTGATGTGG CGCAGGTCAA CGTCGAAACC TTAGGGGTGA TGGACAGAGT TTTCCCGATG 
CAATCGGATC TGTTTTCAGC CATTCCTGAA GGTCCACAAT ACGATTTGAT TGTTTCTAAT 
CCACCCTATG TGGATGAAGA AGACATCGGC GATATGCCAG ATGAATACCA CCATGAGCCT 
GCCATTGGGT TAGCCTCGGG TCGTGATGGC CTTGACTTAA CCAAACGTAT TTTAGCGAAT 
GCGGCTCAAT ACCTGACACC AACGGGTATT TTAGTGGTTG AAGTGGGTAA CTCTATGGTG 
CATCTGATGG AGCAATTCCC TGAAGTGCCA TTTACCTGGG TTAACTTTGA AAACGGCGGC 
GACGGTGTGT TTGTCCTGAC TCGTGATCAA TTGATCGAAC ATCAATCGCT TTTTGCTATT 
TATCGCGATG CGCAATAA
 
Protein sequence
MTELRTIGDM LRWAVSRFND ANVYYGHGTD NAWDEAIALV FHALHLPEEI GQQVILSNLT 
SSEKHKIVEL IIRRVRERLP VPYLTNKARF AGLEFYVDER VLVPRSPIAE MIANRFGPWL 
YGKPVNRILD LCTGSGCIAI ACAYEFDEAE VDALDISEDA LDVAQVNVET LGVMDRVFPM 
QSDLFSAIPE GPQYDLIVSN PPYVDEEDIG DMPDEYHHEP AIGLASGRDG LDLTKRILAN 
AAQYLTPTGI LVVEVGNSMV HLMEQFPEVP FTWVNFENGG DGVFVLTRDQ LIEHQSLFAI 
YRDAQ