| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_3073 |
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| Symbol | |
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| ID | 1170759 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella oneidensis MR-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004347 |
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| Strand | + |
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| Start bp | 3192922 |
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| End bp | 3194853 |
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| Gene Length | 1932 bp |
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| Protein Length | 643 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 637344877 |
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| Product | hypothetical protein |
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| Protein accession | NP_718637 |
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| Protein GI | 24374594 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0665] Glycine/D-amino acid oxidases (deaminating) |
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| TIGRFAM ID | [TIGR03197] tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGATGGGGC AATGGGGATT AGGCGACGGA ATCGAACTGC TCTCTTTTAT TCATTACTGG
CAAACACTGG CTAAAACCCA AAATCTACCG CGCTTACTGC TGAAGGTGTT TGAACCAAAT
CCGATTAACT ATTACGAACT TAAATTACTT TGGGATCAAT CGCAAAGCTT AATTTTACAT
CCGCATTTAC AGCCCATTGC CAACGCCATC ATTGAGGCAA AGCCAGCGCG CATTATAGGG
TGTCAGAGAT TAATTTTTGA TGACGGTCGC ATCAGCCTCG ATTTAGATTT TGGCGATCTG
CAAACCATGC TGGTCAATCA GCCACACTGC GGCACTTATC CCATTCAGCA ATGGCTGATT
TTGCCGCATT TAGCACCGCA ACTGAGTCGT AAAATACTCT GGCAAATGGC GCGCTTAAGT
GCCGATGATG CCCATTTTAT CGGCGTAGAA CTTGCTGAAA CAACGCAGAA TCTCGCCAAA
ACCTGCGGCT TTAGCCCTCT TACCATCACT GCCGACATGC TCTGTGGCGA ACAGATTGAC
TCAATTGCAA GCCAGATTGT CACAGACGAT ATTCTGCTAC ATGAACGCAA GCTCCTGCGC
CAGCAAGCCA ATAACCATCA AGCGTTTACA CCAAGGCCAT CCCAAGTAGC CTCAACCAAG
CAGCCGATAG CCATTATAGG TGGCGGACTG GCGTCAGCGC ATCTGATGTT GTCCTTAGCC
GAACGCGAGC AGAGTAGCAT ACTGTTTTGC AAAGATAATG ACTTAGGACA AGGTGCGTCC
GGTAATCGCC AAGGGGCGAT TTATCCCCTA CTTACGCCAG AGAATGATGA GCTCAGCCGT
TTTTTCCAAC AGGCGTTTTT ATTTAGTCGC CGCCGCATCG CCGCGCTGAG TCTTGCGTCG
ATGAAGGGGT CGGACGTCGC ATCTGGTGTG ATGCCAATTT CCCATGATTT TTGTGGTGTG
CTGCAAACAG GCCATGATGA ACGCAGTCAA CAACGGCTCG ATAAAATTAT CCAAAGCCAA
GACTGGCCGG CGGAAATTGC CTATGCCGTT GATGCGAGCG AAGCCAACAA GATTGCAAAA
ATAGGTATTG ATAAGGCTGG ATTTTATTAT CCCCTCGGCG GCTGGGTGTG CCCTTTTGAA
TACGCTAAGG CGGCGGTGGA TAAAGCCTCG CAGCTTGCCA ATGTGCAGTG CCATTTCAAT
ACCGAAATCA CTGAAATTGA GCGCGATGCT AAGGGCTGGT ATCTTCTCAG CCAAGACCAG
CGTTTTGGAC CGTTCCGTCA ACTCGTGCTC GCCAATGGCG CACAGCTGAC ACAGTTTTCG
GCCAGTGAAC GTTTGCAGAT AAGTCCGTTT CGCGGCCAAG TGAGTCATAT TCCGTCACAA
TTTCAGCTAA GCCAATTGGC CACAGTGTTA TGCGCAAACG GTTACCTCAC GCCAAGCCAT
CAAGGGCTAC ATTGCCTCGG CGCCAGCTAT GTAAAAGCGG CTGAGCACCT CGATTTTTGC
CCGCTGGAGC AGTTGGAAAA TCTTGGTAAA ATGCAACAAA GCTATCCTAA TCAAGATTGG
GTCGAAGATA TTGATATTAG CGCCAATAGC GCCCGCGTTG GCGTGCGCAT GGTAACGCGC
GATCATTTCC CGATGATGGG CTGTGCTCCC GATGTAAATG AGATTTGGGC TCGATATGAG
CAGCACCAAA TTAATCAGCA GCAAGCCGAA CAAATCCGCC ATTATTGGCA AACCACGCCA
GCCCCTATCC ACGATGGCCT TTATATCCTT GGTGGCTTAG GTTCGCGGGG GTTAAGTTCG
GGGCCATTGG CGGCAGAATG CCTAGCCGCT CAATTAACCG ACGAGCCGCT GCCGCTTGAT
TGGCCCACAC TCAATAAACT CAGCCCGAAT CGAATGTGGT TACGCAAACT ACTCAAAGGC
AAAGCACTTT AG
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| Protein sequence | MMGQWGLGDG IELLSFIHYW QTLAKTQNLP RLLLKVFEPN PINYYELKLL WDQSQSLILH
PHLQPIANAI IEAKPARIIG CQRLIFDDGR ISLDLDFGDL QTMLVNQPHC GTYPIQQWLI
LPHLAPQLSR KILWQMARLS ADDAHFIGVE LAETTQNLAK TCGFSPLTIT ADMLCGEQID
SIASQIVTDD ILLHERKLLR QQANNHQAFT PRPSQVASTK QPIAIIGGGL ASAHLMLSLA
EREQSSILFC KDNDLGQGAS GNRQGAIYPL LTPENDELSR FFQQAFLFSR RRIAALSLAS
MKGSDVASGV MPISHDFCGV LQTGHDERSQ QRLDKIIQSQ DWPAEIAYAV DASEANKIAK
IGIDKAGFYY PLGGWVCPFE YAKAAVDKAS QLANVQCHFN TEITEIERDA KGWYLLSQDQ
RFGPFRQLVL ANGAQLTQFS ASERLQISPF RGQVSHIPSQ FQLSQLATVL CANGYLTPSH
QGLHCLGASY VKAAEHLDFC PLEQLENLGK MQQSYPNQDW VEDIDISANS ARVGVRMVTR
DHFPMMGCAP DVNEIWARYE QHQINQQQAE QIRHYWQTTP APIHDGLYIL GGLGSRGLSS
GPLAAECLAA QLTDEPLPLD WPTLNKLSPN RMWLRKLLKG KAL
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