| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_2940 |
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| Symbol | |
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| ID | 1170628 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella oneidensis MR-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004347 |
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| Strand | - |
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| Start bp | 3076443 |
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| End bp | 3080468 |
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| Gene Length | 4026 bp |
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| Protein Length | 1341 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 637344751 |
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| Product | prophage LambdaSo, host specificity protein J, putative |
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| Protein accession | NP_718509 |
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| Protein GI | 24374466 |
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| COG category | [S] Function unknown |
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| COG ID | [COG4733] Phage-related protein, tail component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGGTATTC CAGCATTAAA TCAAAAACTC GTTATCCATG GCGCGAAAGC AGGTGAGAGC
GAGCAGCGTA CTCCGGTTGA ATCGCCTGAT GATCTGCGCT CAATTGCCAA AGCTAAAATC
TTGCTGGCGA TCGGAGAAGG TGAATTTGAG GGACAATTAT CCGGCAAAAA TGTATTTTTA
GATGGCACTC CATTGCTTGA TGCCAATGGC GCTGAAAACT TCCCAGGTGT GATTTGGGAC
TTTCGTCATG GCTCTGTGCA TCAAACTTAT ATTCCTGGTG TCCCCGCAGT TGAAAACGAG
GTTGCCTTAG GGATTGAATT AAAATCAGAG CAGCCTTACA CCCGCGCCAT CACAAACTCA
CTGCTCTCTG CTGTGCGGGT TCGCTTTCGC TGGCCAGCGC TGCAACAGCA ATTAGATAAC
GGTGATGTAA ACGGCTATCG CATTGAGTAC GCCATTGATC TATCTACTAA TGGCGGTAGC
TATCAAACGG TATTAAGCAC GGCGGTTGAC GGCAAAACTA CCCAGCCCTA TGAGCGCAGC
CACCGTATTG ATTTACCTGC TGGTAACAGC TGGCAAATAC GCATTCGCCG CCTCACGCCA
AACCAAAACA ACAACCGTGT GGCTGACTTA ATGCAAATTG CGGCGATCAC CGATGTAATT
GACCGCAAAC TAAAGTATCC AAATACGGCA TTGTTGTACG TGGAATTTGA TGCCAGCCAA
TTCCAGAATA TCCCCGTGGT ATCGTGCGAA CCTTTTATGC GAAAAGTAAA GGTGCCAACA
AACTACAATC CACTGACCCG CCAATATACT GGCGTGTGGG ATGGTAGCTT TAAAATCGCA
TGGACAGATA ACCCTGCTTG GGTGAGTTAC GACATTATCC TTGATGATCG CTTTGGCACA
GGAAAGCGCA TCAATGCGTC GCTGGTGGAC AAATGGGAGC TTTACCGGAT TGCCCAGTAT
TGCGATCAGC TTGTACCAAA CGGTAAAGGC GGCATGGAGC CTCGCTATAT CTGCAATATC
TACATTCAGC AAGCAACAGA AGCGTGGCAA GTGCTACGCG ATTTGGCGTC TATCTACCGT
GGCATGACGT ACTGGTCAAA CGGACAAATC TATTCTGTGG CCGATATGCC TCGCGATATG
GATTTTATCT ACACCAATGC CAACGTGATC GACGGCAAAT TTAGCTATTC ATCCAGTAGC
GAAAAAGTGA AGTACACTCG CGCGTTAATT AGCTGGGATA ACCCAGATAA CGCCTATGAA
TCCGATGTTA CCTCTGTATC AGATCAAGCA TTACAGCGCC GATATGGCGA CAATGTAGTC
GAATTATCGG CATTAGGTTG CACTCGCGAA TCAGAAGCGC AGCGCCGCGG TAAGTGGGCA
CTTTATACCA ATAACAATGA CCGCGCGGTT AATTTTAAAG TGGGCATGGA TGGAAGCATT
CCTTTACCTG GCTTTGTGAT TGGAATTGCC GACCAATTGA TTGCAGGTAG CCGCATTGGT
GGGCGTATCT CGGCGGTTAA CGGCAAACAA ATCACTTTGG ACCGCGCGAC CACAATCGCA
GTTAATGATC GCCTGATTAT CAACTTACCC AGCGGCAAGG CTCAGGCGCG TACCATTGAG
GCCGTTAATG GCCGAGTGGT AACGGTAACT ACTGAATACA GCGAAACGCC ATTACCACAG
CTGTTATGGT CGGTTGAGTC AGACGAGCTA AAGCTACAGC AATTTAGAGT GCTGCGTGTC
GCCAAAGCCA ATAGTGATAG CATTGAGTAC GAGATCACCG CAGTTGAGCA TAACCCAAGC
AAGTACCCAT ACATTGATAC AGGCGCACGG CTAGAAGATC GGCCAATTAG CAAATTGCCT
GTGGGTGCGC AGCAAGCACC AGCTACAGTG ACAATCAGCC AATCAACATT TACTGAGCAA
ACACTGTCAG TCACGACTAT GACAATTCAG TGGGCCACAG CCAAAAATGC AGTGGCTTAC
GAAGTGGAAT GGCGCAAAGA CTCAGGCGAG TGGGTTAAGC TGCCAAAAAC TAGCGGCACC
TCGGTTGATA TTCGTGGCGT TTACACCGGG CAATATATTG CTCGAGTTCG CGCGATCAAC
TCTGTTGATG TGTCGTCAGT GCCTAAGTCC TCTGATCTGA CCAATATCAC GGGTAAAACT
GGCTTGCCGC CAGCGGTAGC CTCGTTCACC ACAACTCCTT TAGTGTTTGG TATTGCGTTA
AATTGGTTAT TCCCTGCTGG TGCAGAGGAT ACCTTGCGCA CCGAAATTGA GTACGGCCCC
AACAATAACG ACAACGGTAT GATCAAGTTA GGTGATTTTG CCTACCCCAT AAACAGCCAC
ACCATGACAG GCCTGAGCGC AGGGGTGAGT TTTTGGTTTA GAGCGCGTTT AGTTGACCGC
ACAGGCAACG TGGGACCATG GTCTAACTTT GTAAACGGCC AAAGCTCAAC CGACCAAACC
AAATATGATG AGTACTTCAG CGAGCGCATT ACATCATCAG CACTTGGGCA AGAACTACTA
GATGAAATTG AGCTAATCCC AGTCATTAAA GCCGAAACCG ATAAAATCCC CGATATTGAA
AACGATATTG CAGTTGCACA GAGCAAGATC GATCAAATGC AAGCGGATAT CGCTGACATC
GCTGGGGCGC CAGAGTGGGA TAGCAATATC GCCTATTTTA GTGGGCAATT AGTAAAATAT
CAGGGCAAAT TGTACTCGGC TAAGCAAGAT GTGCCAGCAG GAACGCTACC AACAAACGCG
ACTTATTGGG AAAAAATAGG CGAGTACTCA ACCATCGGTG AAGCGCTTGC CGCATTAACT
GTGCGAGTGG ATACAGTTGA AACATCAATT GAAGAGATTG ATGGCAAACT GACTGCTGAA
TCATCACGTA TTGATGGAAT TTTTGCTCAA GTTAATCCGC CATTGGCTGG CGATACTGGT
TGGAATGCCG GATCAACCGT GGTATTTGCT GGCGTTTGGT CGGAGCAATA TGCAAGAGCT
GCCGCTGATG AGGCATTGGC AAAAAGTATT GAAACTGTTG CCGCTACCAT TGATAAAAAC
GCGGCGGCAA TCATCACTGA GCAAATGGCG AGAGCCACTG CAGATGAATC ATTGGCAAAA
CAAATCATCA GTATTTCCGC AACGGTAAAC GGCAATGCTG CATTAATTAA ACAAGAGCAA
ACAGCGCGAG CAGATGCTGA TAGCGCCTTA GGTCAACGTA TCGACACAGT GCAGGCAACA
ACAGGGGCTA ACACTGCCGC AATCCAGCAA GAGCAAACAG CGCGAGCAAA TGCTGATAGC
GCCTTAGGTC AACGTATCGA CACGGTGCAG GCCACAACAG GGGCTAACAC TGCCGCAATC
CAGCAAGAGC AAACAGCGCG AGCAAATGCT GATAGCGCCT TAGGTCAACG TATCGACACA
GTGCAGGCCA CAACAGGGGC TAACACTGCA GCAATCCAAC AAGAGCAAAC CGCCCGTGCT
AATGCCGACA GCGCATTAGG CCAACGCATA GATACCGTGC AGGCCACTGC AGGCGCTAAC
ACTGCCGCTG TGCAGCAAAC ATCAACGGCG TTAGCTGAGT TAGACGGCAA GCTGCAAGCA
ATGTACTCGA TCAAAGTTGG GGTAACTGCA GACGGTAAAT ATTACGGCGC AGGCATGGCA
ATCGGTGTGG AGAACACGCC AGAAGGCATG CAATCGCAAG TACTCTTTAC TGCAGATAGA
TTTGCAATTG TGAATAAAAT TACTGGAACA TCAACTATCA CTACGCCTTT TGCTGTCCAA
GGTGGTCAGG TATTTATTAA CAGCGCTGTT ATTGGTGATG GCACAATCAC CAACGCTAAG
ATCGGGGATT ATATCGAATC AACAAACTAT ATTGCACAAA ATACTGGCTG GAAACTGGAT
AAGTCCGGTG TATTTGAAAT TAATGGAAAC ACTGCAGGCG AGGGACGAAT GCAAATATCA
AATAATCAAA TAGATGTTTA TGACAATAGC GGTAATTTAG TTTGCAGAAT GGGTAAATTA
ACATGA
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| Protein sequence | MGIPALNQKL VIHGAKAGES EQRTPVESPD DLRSIAKAKI LLAIGEGEFE GQLSGKNVFL
DGTPLLDANG AENFPGVIWD FRHGSVHQTY IPGVPAVENE VALGIELKSE QPYTRAITNS
LLSAVRVRFR WPALQQQLDN GDVNGYRIEY AIDLSTNGGS YQTVLSTAVD GKTTQPYERS
HRIDLPAGNS WQIRIRRLTP NQNNNRVADL MQIAAITDVI DRKLKYPNTA LLYVEFDASQ
FQNIPVVSCE PFMRKVKVPT NYNPLTRQYT GVWDGSFKIA WTDNPAWVSY DIILDDRFGT
GKRINASLVD KWELYRIAQY CDQLVPNGKG GMEPRYICNI YIQQATEAWQ VLRDLASIYR
GMTYWSNGQI YSVADMPRDM DFIYTNANVI DGKFSYSSSS EKVKYTRALI SWDNPDNAYE
SDVTSVSDQA LQRRYGDNVV ELSALGCTRE SEAQRRGKWA LYTNNNDRAV NFKVGMDGSI
PLPGFVIGIA DQLIAGSRIG GRISAVNGKQ ITLDRATTIA VNDRLIINLP SGKAQARTIE
AVNGRVVTVT TEYSETPLPQ LLWSVESDEL KLQQFRVLRV AKANSDSIEY EITAVEHNPS
KYPYIDTGAR LEDRPISKLP VGAQQAPATV TISQSTFTEQ TLSVTTMTIQ WATAKNAVAY
EVEWRKDSGE WVKLPKTSGT SVDIRGVYTG QYIARVRAIN SVDVSSVPKS SDLTNITGKT
GLPPAVASFT TTPLVFGIAL NWLFPAGAED TLRTEIEYGP NNNDNGMIKL GDFAYPINSH
TMTGLSAGVS FWFRARLVDR TGNVGPWSNF VNGQSSTDQT KYDEYFSERI TSSALGQELL
DEIELIPVIK AETDKIPDIE NDIAVAQSKI DQMQADIADI AGAPEWDSNI AYFSGQLVKY
QGKLYSAKQD VPAGTLPTNA TYWEKIGEYS TIGEALAALT VRVDTVETSI EEIDGKLTAE
SSRIDGIFAQ VNPPLAGDTG WNAGSTVVFA GVWSEQYARA AADEALAKSI ETVAATIDKN
AAAIITEQMA RATADESLAK QIISISATVN GNAALIKQEQ TARADADSAL GQRIDTVQAT
TGANTAAIQQ EQTARANADS ALGQRIDTVQ ATTGANTAAI QQEQTARANA DSALGQRIDT
VQATTGANTA AIQQEQTARA NADSALGQRI DTVQATAGAN TAAVQQTSTA LAELDGKLQA
MYSIKVGVTA DGKYYGAGMA IGVENTPEGM QSQVLFTADR FAIVNKITGT STITTPFAVQ
GGQVFINSAV IGDGTITNAK IGDYIESTNY IAQNTGWKLD KSGVFEINGN TAGEGRMQIS
NNQIDVYDNS GNLVCRMGKL T
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