Gene SO_2923 details

Gene Information

• Locus tag: SO_2923
• Symbol: gltS
• ID: 1170612
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella oneidensis MR-1
• Kingdom: Bacteria
• Replicon accession: NC_004347
• Strand: +
• Start bp: 3054829
• End bp: 3056052
• Gene Length: 1224 bp
• Protein Length: 407 aa
• Translation table: 11
• GC content: 48%
• IMG OID: 637344736
• Product: sodium/glutamate symporter
• Protein accession: NP_718493
• Protein GI: 24374450
• COG category: [E] Amino acid transport and metabolism
• COG ID: [COG0786] Na+/glutamate symporter
• TIGRFAM ID: [TIGR00210] sodium--glutamate symport carrier (gltS)

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCACACCA CTTACACAAT TGGCGAACTC GAGTCGTTCT TAATTGCTAT CTTCGTGCTG 
TTTATTGGCC ATTCCATTAA TCGCCATGTG CGTGTTTTTA AACAATACAA TATTCCAGAG 
CCTATTGTTG GTGGGCTTGT CGTCGCTGCT GTCATAGCAT TTTTGCATTT CCAAGACATC 
ACCCTCGCCT TTAGCTTGCC CATGCAAAAT ACTTTAATGT TGATGTTTTT CAGCACAATA 
GGTTTATCGG CGAACTATAA GCTACTACTG AGTGGCGGTA AGAAAGTGTT TATTTTTCTT 
GGCGTGGCTT CGGTTTATAT CATTATTCAA AATGCGGTCG GCGTGAGTCT CGCGAGCCTG 
TTAGGGTTAG ATCCTATTCT TGGCCTTATT GCAGGTTCCA TTACCCTTTC AGGCGGGCAT 
GGTACTGGCG TCGCTTGGTC GCAAACCTTT GCCGAAAATT ATGGCATTAA CACCTTAGAA 
TTCGCGATGG CGGCGGCAAC CTTTGGACTC GTTATGGGCG GGATCATCGG CGGCCCCGTC 
GCACAGCGAT TAATTAGCAA GCACAATCTT GTTTCAAGCT ATGGTGTTGG TCGAAAGCAC 
CACGCCACTC ATCCGCAATT GGTCACCTAT GATCAGCTCG AAGAAGACCA AGTTACCGCC 
AAAACGATTA TTGAAACCCT GTTTGTACTG CTGTTTTGTG TCGCGGGAGC GAAATGGTTT 
ACTGTGCTGG TCAGCGAATA CGGGCTTAAT TGGCTCAAAA TGCCGGATTT TGTCTATGCG 
TTATTTCTCG GCGTAGTGAT AGCAAACATC ACTGAAGTCA CTCGCGGTTA CAAACCCCAT 
ACTGAGAGTA TCGATGTGAT AGGCACGGTG GCACTGTCAT TATTCCTCTC TATGGCCTTG 
ATGAACCTTA AGTTGTGGGA GATTTTAGAT CTCGCCATTC CGTTACTTAT CATCCTAGTC 
GTACAAACCG CTGTGCTCGC CGTGTTTGCC TACTTTGTGA CCTTTAAAGT AATGGGTAGC 
AACTATGATG CGGCGGTGAT CACAGGAGGC CACTGCGGCT TTGGTATGGG TGCGACCCCC 
ACGGCAGTAA TGAATATGGG TGCACTCGTG TCGCGCACCG GCCCATCGCC CCAAGCCTTT 
ATGGTGGTGC CAATTGTGGG CGCGTTCTTT ATCGATATCG TCAATTTAAT CGTCCTGCAG 
GGCTACCTCA GCTTTATCAT GTAG 

 

Protein sequence

MHTTYTIGEL ESFLIAIFVL FIGHSINRHV RVFKQYNIPE PIVGGLVVAA VIAFLHFQDI 
TLAFSLPMQN TLMLMFFSTI GLSANYKLLL SGGKKVFIFL GVASVYIIIQ NAVGVSLASL 
LGLDPILGLI AGSITLSGGH GTGVAWSQTF AENYGINTLE FAMAAATFGL VMGGIIGGPV 
AQRLISKHNL VSSYGVGRKH HATHPQLVTY DQLEEDQVTA KTIIETLFVL LFCVAGAKWF 
TVLVSEYGLN WLKMPDFVYA LFLGVVIANI TEVTRGYKPH TESIDVIGTV ALSLFLSMAL 
MNLKLWEILD LAIPLLIILV VQTAVLAVFA YFVTFKVMGS NYDAAVITGG HCGFGMGATP 
TAVMNMGALV SRTGPSPQAF MVVPIVGAFF IDIVNLIVLQ GYLSFIM