Gene SO_2895 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSO_2895 
SymbolpdxH 
ID1170585 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella oneidensis MR-1 
KingdomBacteria 
Replicon accessionNC_004347 
Strand- 
Start bp3016931 
End bp3017569 
Gene Length639 bp 
Protein Length212 aa 
Translation table11 
GC content47% 
IMG OID637344711 
Productpyridoxamine 5'-phosphate oxidase 
Protein accessionNP_718467 
Protein GI24374424 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG0259] Pyridoxamine-phosphate oxidase 
TIGRFAM ID[TIGR00558] pyridoxamine-phosphate oxidase 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACAGATC TCAGTGATAT TCGCCGTGAA TATACCCAAG GTGGCCTAAG ACGCGCCGAT 
TTACCCAAAA ACCCGATGCA GCTATTTGAA TTGTGGATGA CACAAGCCAG AGATGCACAG 
CTGAGCGATC CTACTGCTAT GTGTGTGGCA ACAGTGGATG AGCATGGCCA ACCTTTTCAA 
CGAATTGTGT TATTAAAACG CTTCGATGAT AGCGGTTTTG TGTTTTTTAC TAACTTAGGT 
AGCCGCAAAG CACTGCAGAT TGCGGCCAAT AATAAGGTGA GTTTGCATTT TCCTTGGCAT 
CCCATTGAGC GCCAAGTGTC GATTCTGGGT GAAGCGCAGC CGCTTTCTAC CGCCGAAGTG 
CTGAAATACT TTATGACGCG GCCAAAGGAA AGCCAAATTG CGGCTTGGGT ATCGCAGCAG 
TCGAGCAAAC TGAGTGCCAG GCAAGTGCTC GAAGGTAAAT TTTTTGAAAT GAAAGCCAAG 
TTTGCCAAAG GGGACGTGCC TCTACCTAGC TTTTGGGGAG GGTATTTGGT TAAACCTTCG 
AGTATTGAAT TTTGGCAGGG CGGAGAACAC CGATTGCATG ATCGTTTTCT CTATACTCGT 
GAAGCACAAG CATGGCAGAT TGATCGTCTA GCACCTTAA
 
Protein sequence
MTDLSDIRRE YTQGGLRRAD LPKNPMQLFE LWMTQARDAQ LSDPTAMCVA TVDEHGQPFQ 
RIVLLKRFDD SGFVFFTNLG SRKALQIAAN NKVSLHFPWH PIERQVSILG EAQPLSTAEV 
LKYFMTRPKE SQIAAWVSQQ SSKLSARQVL EGKFFEMKAK FAKGDVPLPS FWGGYLVKPS 
SIEFWQGGEH RLHDRFLYTR EAQAWQIDRL AP