| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_2742 |
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| Symbol | |
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| ID | 1170441 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella oneidensis MR-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004347 |
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| Strand | - |
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| Start bp | 2858291 |
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| End bp | 2861728 |
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| Gene Length | 3438 bp |
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| Protein Length | 1145 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 637344565 |
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| Product | sensor histidine kinase/response regulator |
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| Protein accession | NP_718326 |
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| Protein GI | 24374283 |
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| COG category | [E] Amino acid transport and metabolism
[R] General function prediction only
[T] Signal transduction mechanisms |
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| COG ID | [COG0591] Na+/proline symporter
[COG0642] Signal transduction histidine kinase |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATCTCA CCTTAGTCGT CGCCGTTATT GCTATTTGTT ATGTATCACT TTTATTCCTT
TTAGCGTGGG GAGCAGAGCG CTGGTTTAGC GGCGTCACCA AGAAGCTGCA AGTGGTCATT
TATGGCTTAA GTCTGGCGGT TTATTGTTCT TCTTGGAGTT TTTTGGGCAC AGTTGGACAA
TCAGCTAAGG ATTTTTGGTC GTTCATTCCG ATTTTTGTTG GCCCGATCCT TATCTTCACC
TTAGGGTTTG GCATGTTGCG CAAGATGGTT TTAGTGTCAA AAGCGCAAAA TATTACCTCT
GTCGCCGACT TTATTGCCGC CCGTTACGGC AAGTCGCAAA CCTTAGCGGC CATTGTCACC
TTAATCGCAA TGTTTGGCAT TATGCCTTAC ATTGCCCTGC AACTTAAGGC GATGGTGTTT
AGCCTTAACC TGTTTCAACC CGCGGATGAC CCCTTAAATG GCGTTACGAT TGCGCTACTT
ATCACCGCGC TATTAGCCAT TTTTGCCATT CTTTTTGGCA CTCGTAAGCT CGATGCTACC
GAGCATAATC CTGGGATGAT GCTGGCGATT GCTTTCGAAT CCTTAGTTAA ACTCGCGGCA
TTTTTGCTGG TGGGGATTGT GATTAGCTTT GGCGTATTTG ACGGGTTTGG CGATATTTGG
CAGCAGGCGA GTGATAAATC GTTAATTCAT CACCCAAATC CCCGTATTGA AACCTTGATG
CCCGAACTGC TTGTCGGTAT GGCGGCTTTT TTGTGTATGC CGCGGCAATT CCATGTGATG
GTGGTGGAGT GTGCCGATGA GTCGGTGTTG TCTAAGGGAC GTTGGTTGTT TCCGCTGTAT
TTGGCCTTAT TTGGCCTATT TGTCGGGCCA TTGGCCTTAG CGGGCAAATT GATCTTGGGC
GATAGCGTTG CCGCTGACAC CTATGTGATT AATTTACCGC TTGCGTTAGA TCATCCGCTG
CTGGCGGTGA TTGCGCTGTT AGGTACCTTA TCTGCGGCAA CCGGTATGGT GATTGTGGCT
GTAGTGACAA TAAGTGTCAT GGTCAGTAAC GAATGGCTCG TCCCTGTGGT GCTGCGTACA
GGTAATATCC GCGAGAAAAA CTTCAGTCAG TTTTCGCAGA TGCTACTAAA TGCCCGCCGC
CTCGCGATTG TCATCATCCT TGGGCTGGGT TATGGCAGTT ATCTGGCGTT GGCCGATAGT
GATTCGCTAT CACACCTTGG GATGCTGTCC TTTGGCGCAT TTGCCCAACT AGCACCGGCG
CTCGTCGGTG GGCTTTACTG GAAGCACGGC AATCGTGCGG GGGTGTTTTT AGGCTTAAGT
GTCGGTTTTA GCTTGTGGTT TTACATCATG CTCAGTGGCA TGACGGGTAA CCAAAGCCCT
GCGGCATTAA TGTCGAGTAA TATCGACCTG TTAGATGCCA TCACGCCGAA TGTGCGCGAT
GCGCTTACGG CATTATTTGC CAATATTGCC TGTTATGTGT TGGGTTCAAT TTGGTTCAGG
GCTGGGGTGG CTGAGCGTAT TCAGGCCAGT GCTTTTGTTA GCCCGGGAAA GCTTAAAAAT
AATGCCAGTA AGAAAAGCGG CCCTATCTCG CAGCAGGATT TACTGATCTT AGCCAGTCGC
TTTGTGAGTC CAACCCGCGC CTATGAAAGC TTTAGTCGAT TCTCTACCGA AGCTGTTAAA
AGTGACAGTT GGCATAAGGC TGCGACCCCT GAACTCATCG CCCATACTGA GCGCTTACTC
GCTGGTGTGT TAGGCGCTTC GAGTGCTTCT TTAGTGATGG ATTCTGTCTT ACAAGGGCGT
GACTTGGCCT TAGATGAAGT CTTTAGCCTT GTGGATGAGG CTTCATCTAA AATCATGCTC
AGCCAAGATA TGCTGCGTGG AGCGATTGAG CATGCCTACG AAGGGATGAG TGTTATCGAT
AGCGATCTTA ACTTAGTGGC ATGGAACTAT AAATATGTTG AGTTATATCA ATATCCCGAG
GGATTTTTAC AGCAAGGTAT GCCTATCAGT GAAGTGATCC GCTTTAATGC TGCAAGGGGA
TATTGCGGCA GCGGCGCTAT CGAGCAACAG GTTGAAAAAC GTGTGCAGCA TATGCGTAAT
GGCACACCGC ATACCTCAGA GCGTCAGCGT AAAGATGGTA AAGTGATTAA AATTCAAGGT
AATCCCATGC CCGATGGTGG TTTTGTGATG ACTTTTACCG ATATTACCCA ATATCGCCAG
CAGGAACGGG CGTTACTCGA AGCCAATGAA ACGCTCGAAT CGCGAGTAAA AGAGCGTACT
TTTGAATTAG CGATGTTAAA CAGTGAGCTG CTTGAGGCCA AAGCACAGGA GGAAATGGCT
AACGCCTCTA AGAGCCGCTT TTTAGCGGCG GTGGGGCACG ATTTAATGCA GCCACTGAAT
GCGGCAAGGT TGTTTACCGC CTCTTTATCC CAATATCCGA ATTTAGATCG TGAGGCGCGC
ACCACCTTAT CCCATGTGAA TAGCTCGCTT AAAACCGCTG GTGAGTTGCT CACCGACTTA
TTGGATATTT CGAAGTTGGA TTCCGGCATG GTGGACGTGA ACCGCCGCGA CTTTGCGATT
TCAGAGCTGC TCAATGGGCT GTCGGTCGAA TTTGAGGCGA TGGCGGCGGA CAATCAAATT
CGCTTCAAGA TGATCCCCTG TAGCGCGACG GTGAACTCCG ATCCTTCTTT GCTTAGGCGT
GTGCTGCAAA ACTTTTTAAC CAATGCCTAC CGTTATGCCC GCGGAGGGCG AGTACTTTTT
GGTTGCCGTC ATCGCGGCAG TGAATTGGAG ATCCAAGTGC TTGATACTGG CTGTGGGATT
GATGAGCATG AAACACATGA AATCTTTAAA GAATTTAAAC GCTTAAATAA TCCTCGGAGT
AAAAGTGTCA GCGGTTTAGG CTTAGGGTTG GCGATTGCCG ATAGGATAAG CCGCGTGCTA
AACCACGGTA TTCAAGTGTC TTCGCAATTG GGGCGCGGCT CGGTGTTTTC TATTACTGTA
CCCTTAGGTG AAACCGTGCG TCAGCCGCAG GTGAAGGCAT TGCCATCGTT ATTACAACCG
TTATCCGGGA TTAAAGTGCT GTGTATCGAC AATGAGGAGG CCATTCTAGC GGGGCTTGAA
AGTCTACTGA GTCGTTGGCA ATGCGAGGTG ATTTGTGCCA AAGACTTAGC CGATGCACGG
ATTAAATTAG GCCTTAAAGG GGTGGCGCCC GATATCGTGT TAGCAGATTT TCACTTGGAT
GATGGTCAAA ACGGTGTTGA TGCGATGGAT GGGATCCGCT CACTCTATGG CAAGGATTTA
CCGGGTATTT TGATTACAGC CAATACCCGC AAAGAGCTGG TGGAAGATGT GCAGCGCCGC
GGTTATCACT ATATGGCGAA AATGATTAAA CCGGCGGCGC TGCGGGCATT GATATCAAGC
CTGGTCAAAA AGGCTTAA
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| Protein sequence | MNLTLVVAVI AICYVSLLFL LAWGAERWFS GVTKKLQVVI YGLSLAVYCS SWSFLGTVGQ
SAKDFWSFIP IFVGPILIFT LGFGMLRKMV LVSKAQNITS VADFIAARYG KSQTLAAIVT
LIAMFGIMPY IALQLKAMVF SLNLFQPADD PLNGVTIALL ITALLAIFAI LFGTRKLDAT
EHNPGMMLAI AFESLVKLAA FLLVGIVISF GVFDGFGDIW QQASDKSLIH HPNPRIETLM
PELLVGMAAF LCMPRQFHVM VVECADESVL SKGRWLFPLY LALFGLFVGP LALAGKLILG
DSVAADTYVI NLPLALDHPL LAVIALLGTL SAATGMVIVA VVTISVMVSN EWLVPVVLRT
GNIREKNFSQ FSQMLLNARR LAIVIILGLG YGSYLALADS DSLSHLGMLS FGAFAQLAPA
LVGGLYWKHG NRAGVFLGLS VGFSLWFYIM LSGMTGNQSP AALMSSNIDL LDAITPNVRD
ALTALFANIA CYVLGSIWFR AGVAERIQAS AFVSPGKLKN NASKKSGPIS QQDLLILASR
FVSPTRAYES FSRFSTEAVK SDSWHKAATP ELIAHTERLL AGVLGASSAS LVMDSVLQGR
DLALDEVFSL VDEASSKIML SQDMLRGAIE HAYEGMSVID SDLNLVAWNY KYVELYQYPE
GFLQQGMPIS EVIRFNAARG YCGSGAIEQQ VEKRVQHMRN GTPHTSERQR KDGKVIKIQG
NPMPDGGFVM TFTDITQYRQ QERALLEANE TLESRVKERT FELAMLNSEL LEAKAQEEMA
NASKSRFLAA VGHDLMQPLN AARLFTASLS QYPNLDREAR TTLSHVNSSL KTAGELLTDL
LDISKLDSGM VDVNRRDFAI SELLNGLSVE FEAMAADNQI RFKMIPCSAT VNSDPSLLRR
VLQNFLTNAY RYARGGRVLF GCRHRGSELE IQVLDTGCGI DEHETHEIFK EFKRLNNPRS
KSVSGLGLGL AIADRISRVL NHGIQVSSQL GRGSVFSITV PLGETVRQPQ VKALPSLLQP
LSGIKVLCID NEEAILAGLE SLLSRWQCEV ICAKDLADAR IKLGLKGVAP DIVLADFHLD
DGQNGVDAMD GIRSLYGKDL PGILITANTR KELVEDVQRR GYHYMAKMIK PAALRALISS
LVKKA
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