Gene SO_2648 details

Gene Information

• Locus tag: SO_2648
• ID: 1170349
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella oneidensis MR-1
• Kingdom: Bacteria
• Replicon accession: NC_004347
• Strand: +
• Start bp: 2785216
• End bp: 2785878
• Gene Length: 663 bp
• Protein Length: 220 aa
• Translation table: 11
• GC content: 46%
• IMG OID: 637344473
• Product: LuxR family DNA-binding response regulator
• Protein accession: NP_718232
• Protein GI: 24374189
• COG category: [K] Transcription; [T] Signal transduction mechanisms
• COG ID: [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAGCTAG AAAACTTAAA TATTATTATT GCCGACGACC ATCCATTGTT TCGAAATGCA 
CTACGTCAAG CCCTCAGTAG CGCCTTTGAG CACACTCAGT GGTTCGAGGC CGACAGTGCT 
GATGCGTTGC AATCGGTATT AGACTCACCA ACAGTGAGTT ACGACTTAGT GCTCTTGGAT 
CTGCAAATGC CCGGTTCACA CGGCTATTCA ACGCTCATCC ACCTGCGCTC CCATTATCCA 
GATCTGCCTG TTATCGTGAT TTCTGCCCAC GAGGATATCA ACACCATTAG CCGTGCGATA 
CACTATGGTG GTAGCGGTTT TATTCCTAAA TCGGCGTCAA TGGAAACCTT AAAGGAAGCC 
CTAACCGCCG TATTATATGG AGATATATGG CTGCCCAAAG GCGCAGATAT TATACCTATC 
GAAGATGACA GCACTGATAA GATGGCCAGT AAGCTCTCAG ATTTGACGCC GCAGCAATAT 
AAAGTACTGC AAATGTTTGC CGAGGGCTTG CTCAATAAAC AAATCGCCTA CGACTTGGGC 
GTCTCAGAAG CGACCATTAA AGCACATGCC ACTGCTATTT TTAGAAAACT AGGCGTTCGC 
AATCGCACTC AAGCCGTTAT CGCTTTAGGG CAGCTTGAAA TGGATAAAGT GGATTTGTTG 
TAG 

 

Protein sequence

MKLENLNIII ADDHPLFRNA LRQALSSAFE HTQWFEADSA DALQSVLDSP TVSYDLVLLD 
LQMPGSHGYS TLIHLRSHYP DLPVIVISAH EDINTISRAI HYGGSGFIPK SASMETLKEA 
LTAVLYGDIW LPKGADIIPI EDDSTDKMAS KLSDLTPQQY KVLQMFAEGL LNKQIAYDLG 
VSEATIKAHA TAIFRKLGVR NRTQAVIALG QLEMDKVDLL