Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SO_2612 |
Symbol | holB |
ID | 1170314 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella oneidensis MR-1 |
Kingdom | Bacteria |
Replicon accession | NC_004347 |
Strand | - |
Start bp | 2748778 |
End bp | 2749734 |
Gene Length | 957 bp |
Protein Length | 318 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 637344439 |
Product | DNA polymerase III, delta prime subunit |
Protein accession | NP_718197 |
Protein GI | 24374154 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0470] ATPase involved in DNA replication |
TIGRFAM ID | [TIGR00678] DNA polymerase III, delta' subunit |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGTAGAGC ACCGTGGATT TGATGTGTTA AGCCTGCCTT GGCTCGATGT GCCAAGACAG GCGTTTTTAA CCCAGTTACA AACCCAAAAA GTCCCCCATG CGCAACTAGT GGGTATCGAT TCCGCCTATG GTGGGGAACT CTTGAGTGTG TTTATGGCGC GCGCTGCCAT GTGTTCACAA CCCACTCACA CAGGAGGATG CGGTTTTTGT AAGTCCTGCC AGTTATTTGA TGCGGGTAAT CATCCTGATT TTTATCAAAT CGAGGCCGAT GGCCATCAAA TCAAAGTCGA TCAAATTCGT GAGCTTTGTA GCCGCTTAAG TGCGACTGCC CAGCAAAGTG GCCGCCGTGT AGCCATTATC CACCATAGCG AGCGTTTAAA CTCAGCATCT GCGAATGCGC TACTTAAGAC ACTCGAAGAG CCAGGTAAAG ATACTTTACT GCTATTACAT TCCGATACGC CTGCACGTTT AATGGCCACG ATCAGCAGCC GTTGTCAAAG ACTTCCCTTT GTGGCTCCGT CTAAGACCTT GATCAAAAAT TGGCTAATTC AGCAATGCCA GATCCAAGAG GATGTGACTT GGTGCTTGAG TGTGGTCGGC GGCCCATTAA AGTTGGCAGA GAGTTTGCAA TCAAATAGCA CGCAGCCTAG TCGTTATCAA ACCTTATTAG GTTTTCGCAA AGATTGGGCG CAAAGTTTGT CGTCGGGCCA TCTGTGTGCT AGCTTGTTAA TAATAAGTGA ACAGCAAATT ATTGATGCTC TTAAGGTTTT ATACTTACTT TTGAGACAAA TTTTATTGAA GAATGGCAAC CAAGATGCGT ATGTTCAGGC GCAAATAGGG AACTTGGCGG CGAAAGTCAT GGGAATGTGT CATAGCTTAA GTGCCATGCC AAGTGTCAAT TATTTGGGCT TGTGTCAAAG TTATGTTTTA GAATATAGAG ATATAACAAA TAAGTAA
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Protein sequence | MVEHRGFDVL SLPWLDVPRQ AFLTQLQTQK VPHAQLVGID SAYGGELLSV FMARAAMCSQ PTHTGGCGFC KSCQLFDAGN HPDFYQIEAD GHQIKVDQIR ELCSRLSATA QQSGRRVAII HHSERLNSAS ANALLKTLEE PGKDTLLLLH SDTPARLMAT ISSRCQRLPF VAPSKTLIKN WLIQQCQIQE DVTWCLSVVG GPLKLAESLQ SNSTQPSRYQ TLLGFRKDWA QSLSSGHLCA SLLIISEQQI IDALKVLYLL LRQILLKNGN QDAYVQAQIG NLAAKVMGMC HSLSAMPSVN YLGLCQSYVL EYRDITNK
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