Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SO_2469 |
Symbol | |
ID | 1170183 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella oneidensis MR-1 |
Kingdom | Bacteria |
Replicon accession | NC_004347 |
Strand | + |
Start bp | 2589746 |
End bp | 2592421 |
Gene Length | 2676 bp |
Protein Length | 891 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 637344299 |
Product | TonB-dependent receptor |
Protein accession | NP_718056 |
Protein GI | 24374013 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG4206] Outer membrane cobalamin receptor protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACTACGC AAACAACCGT AGCTCGTGCG GTTCGTTTTA GTTTATTAGC CTTAGTATCC ACCTCGATTG CACCGATTGC GATGGCTGCA GAACAAGGTG CTGTAGATGC TAATAAAGTT GAACGTATCG CTGTAACCGG ATCAAGAATC CAACGTACCG ATATGGAAAC ATCTTCTCCA GTGACAGTTA TCAGCCGCGC AGAAATTGAT GCTTCTGGTA CTGCTACTGT GTCTGATTTT GTGCGTAACC TATCGCAAAA CAGCTTTGGC TCTTTCCGCG AAGCATCAGG CTTTGGTTCT GGACAATCTT CACAATCCAC AGTAAGCATG CGTGGTTTAG GTTCGCAACG TACTTTAGTG CTAATCGATG GTCGTCGTAT GGGCTCGTCA GTTGCCTTTG GTGGCGGTAC ACAAAACCTC AACGTTGTCC CCATGGCAGC GATTGAACGT ATTGAAGTTC TGCGTGACGG CGCATCAGCG GTTTATGGTT CTGATGCGGT TGCTGGTGTA ATTAACATTA TCACCAAAAA AGAATTTGAA GGTGTTGAAT TTGATGCAGA TTTAGGTGCG ACTCAACATG GTGGAGCAGA AAAATCAAAT GCTCGTTTCA CTTTTGGTGT CAATAGCGAA AAAACCAATA TGGTTGCCTC GGTTGAATAC TATAATCGCG CAGCACTTTA CGATGCGGAT CGCGATTACA GCGATACCCT TTATAGCGCT CATGGATGGC CTGGTACTGG TTCTTATGTT GATAAAACAA AACCAATTTT AGATGCGGAC GGAAAACCAA CCGGAAAATA TCAAACAGTA TCATTTGCAG ATAAACGTTG CGGTGAGGGA AACTCTTTAG TCACAGGACC TGATGGAAAT CAAACTTGTT CATATAATGC TGCAGCAGAA TCGGCAACGA TGGCGGCACA AGAACGATTC TCAACCTTCG TCAAAGTAGA TCACGAGTTA ACTGAAGATA TTAACTGGAC TAACCGCTTA ATGATGAGCC GCGTTTGGAC CGAGGGGCAA TATGCCGCCG CACCAAACAG TTATAGCCCT AAATTACGTT GGACAAAAGA AAACAGTGAT ATTTATCTAG CAACGGTTAA TAAATATGGC AACGATTATT TAAAAAACCA ACTGAAGTAT GATGCTAAAG GTAACTTAAT TGGTGGTGAC ACCATCAATT TAAAAATGCG TACGACGCCA CTTGGGCCAC GTGTTACTAA TGTTGAAGAT ACCGATATCA ACTTCTTAAC TGCGCTTGAA GGTCATAGTG ATATTTTAGG CGGCACCGCT TGGAACTTAG GTGCTCAGTG GATTCGCTCA GATGTCACCA CCATTCAAAC TGGCTTAGCT AATGCCAATA TGATCCAAGA GTTTTTGGAT AATGGTAAAT TAGATTACTT TGCCGCGGGT ACAGGTTATG TTGAAGGCTC AAACGAGCTG CAACTGCAAG AAGCCGCCCA TACAGGAATT TTCACTGGTC GCGTCCAAAC CTACGGAATC GATGGTGGTG CCAGCTTTGA TTTATTTGAA TTACCAGCAG GCACAGTCCC CTTAGCCATC GGTTTTGAAT TTATGCGTAC CGAGTACGAC AAGACTAATG ATGCGGGTTC AAACCTAGGT AATATTATCG GTACTTCAGG TGGCGACAAT ATCCAAGGTA AATCACGAGA AGTGTTATCT TTCTCTGCTG AGACTATGTT CCCGATTATC GATGGACTTG ATTTAGAATT ATCTGCACGT TTTGATGACT ACAGTGATTT TGGCAGTACC TTTAATCCTA AAGTGGGTTT AAGTTACCGT CCCGTTGATT CGCTGTTAGT TCGTGCGTCT TATGGCACAG GTTTTAGAGC TCCGACCTTT GATGACTTAT ACGCTACAGC TTCAGAAACC TATCTTTGGG CTAGAGACTG GACGCAATGT CCGGGTAATC CTAATGGTTG CGTGCAAGAA CAATTCAAAG CTCAATATCA AGGGAATGAT GACTTAGAAC CCGAAGAGTC GACTTCACTC TCTTTAGGCT TGGTATGGAA CGTCACCGAC GCATTAGATT TTGAACTCTC ATACTATGAC ATTCAAATCG ACAATGTGAT CAGCACCATG TCAACCCAAG ACGTCCTTAA CCAAGAGCGT GATGGCTTTG ATATGTCAAA TGTTCTGTTT AGAGACCCTG TAACAGGTAA AATTGATTAT GTTGTTCTAC AGAAGATGAA CCTCGGTGAA TTAAAAACTT CTGGTATTGA CTTCAATATT CGTTACCTGC TTGAAACCAG TGTGGGTGAG TTCCGCTTCG GTGCAGAAAC TAACTACGTA TTAAGCTGGG AGTCGAAGGA TGGTCCTTAT TCCGAGCTTG AAGATATTAT CGGTGATGTT GGTCAACCAC AATTCCGTGC CAACCTCAGC ACAACTTGGA CTCAAGGTGA ATGGGAAGCA TCATTGTTTG CCCGTTATAC TGATAGCCAA GAAGATGAGG ACTATGGCAA AACACCAAGC CAGTGGTTGT TAGATGCGCA AGCAGGTTAC AACTTACCGT GGAATGCTAA GGTGAATGTA GGTATTCGTA ATCTGCTCGA CGAAGAACCA GCAATGAATG AGAACTTGGG CTTCCCAGGA TATGACACCT ACTTGTACGA TCCTATTGGC CGTGAATACT ATGTTCGCTA CAACCAAAAA TTCTAA
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Protein sequence | MTTQTTVARA VRFSLLALVS TSIAPIAMAA EQGAVDANKV ERIAVTGSRI QRTDMETSSP VTVISRAEID ASGTATVSDF VRNLSQNSFG SFREASGFGS GQSSQSTVSM RGLGSQRTLV LIDGRRMGSS VAFGGGTQNL NVVPMAAIER IEVLRDGASA VYGSDAVAGV INIITKKEFE GVEFDADLGA TQHGGAEKSN ARFTFGVNSE KTNMVASVEY YNRAALYDAD RDYSDTLYSA HGWPGTGSYV DKTKPILDAD GKPTGKYQTV SFADKRCGEG NSLVTGPDGN QTCSYNAAAE SATMAAQERF STFVKVDHEL TEDINWTNRL MMSRVWTEGQ YAAAPNSYSP KLRWTKENSD IYLATVNKYG NDYLKNQLKY DAKGNLIGGD TINLKMRTTP LGPRVTNVED TDINFLTALE GHSDILGGTA WNLGAQWIRS DVTTIQTGLA NANMIQEFLD NGKLDYFAAG TGYVEGSNEL QLQEAAHTGI FTGRVQTYGI DGGASFDLFE LPAGTVPLAI GFEFMRTEYD KTNDAGSNLG NIIGTSGGDN IQGKSREVLS FSAETMFPII DGLDLELSAR FDDYSDFGST FNPKVGLSYR PVDSLLVRAS YGTGFRAPTF DDLYATASET YLWARDWTQC PGNPNGCVQE QFKAQYQGND DLEPEESTSL SLGLVWNVTD ALDFELSYYD IQIDNVISTM STQDVLNQER DGFDMSNVLF RDPVTGKIDY VVLQKMNLGE LKTSGIDFNI RYLLETSVGE FRFGAETNYV LSWESKDGPY SELEDIIGDV GQPQFRANLS TTWTQGEWEA SLFARYTDSQ EDEDYGKTPS QWLLDAQAGY NLPWNAKVNV GIRNLLDEEP AMNENLGFPG YDTYLYDPIG REYYVRYNQK F
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