| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_2402 |
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| Symbol | rpsA |
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| ID | 1170119 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella oneidensis MR-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004347 |
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| Strand | - |
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| Start bp | 2505090 |
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| End bp | 2506757 |
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| Gene Length | 1668 bp |
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| Protein Length | 555 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 637344237 |
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| Product | 30S ribosomal protein S1 |
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| Protein accession | NP_717992 |
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| Protein GI | 24373949 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0539] Ribosomal protein S1 |
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| TIGRFAM ID | [TIGR00717] ribosomal protein S1 |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACTGAAT CTTTTGCTGA TCTATTTGAA CAATCCCTTC AAACTCTGGA GTTTCGTCCA
GGCTCTATCG TTCGTGGTAC TGTAGTTGCT ATCGAAAACG GTATGGTTTT GGTTGATGCA
GGTCTGAAGT CTGAAAGCCC AATCCCAGCT GAACAATTCA AAAACGCTCA AGGCGTTTTA
GAAATCGCTG TTGGTGATGA AGTTGACGTA GCTCTTGACT CTGTTGAAGA CGGCTTCGGT
GAGACTCAAC TGTCTCGCGA AAAAGCGAAA CGTCACGAAG CTTGGATCGT TCTGGAAAAA
GCTTACGAAG ATGCTGAAAC TGTAATCGGT ATCATCAATG GTAAAGTGAA AGGCGGTTTC
ACTGTTGAAT TAAACGGTAT CCGTGCCTTC TTACCAGGTT CTCTAGTTGA TGTGCGCCCA
GTTCGCGACA CCGCTCACTT AGAGTACAAA GAATTAGAAT TCAAAGTTAT CAAACTAGAC
CAGAAGCGTA ACAACGTTGT TGTTTCTCGT CGTGCAGTTA TCGAATCAGA AAGCAGCGCT
GAGCGTGATG CACTGTTAGA AAACCTGCAA GAAGGTCAAG CAGTTAAAGG TATCGTTAAG
AACCTGACTG ACTACGGTGC ATTCGTAGAT TTAGGTGGCG TTGACGGTCT GTTACATATC
ACTGATATGG CATGGAAACG CGTTAAGCAC CCATCTGAAA TCGTAAATGT TGGTGACGAA
ATCAACGTTA AAGTTCTGAA GTACGATCGT GAGCGCACTC GTGTATCTCT AGGTCTGAAA
CAACTTGGCG AAGATCCATG GTTAGAAATC AGCAAGCGCT ACCCAGAAAA CACTAAGTTA
ACTGGTCGCG TAACTAACCT GACTGACTAC GGCTGTTTCG TTGAAATCGA AGAAGGCGTT
GAAGGTTTAG TTCACGTTTC TGAAATGGAT TGGACTAACA AGAACATCCA CCCATCTAAA
GTGGTTAACT TAGGTGATGA AGTTGAAGTT CTGGTTCTGG ACATCGATGA AGAGCGTCGT
CGTATTTCTC TAGGTCTGAA GCAATGTAAG ACCAACCCAT GGGATGACTT CGCAACTCGT
TACAACAAAG GCGACAAGGT TTCTGGTAAG ATCAAGTCAA TCACTGACTT CGGTATCTTC
ATCGGTCTTG ACGGCGGTAT CGATGGTTTA GTTCACCTGT CTGACATTTC TTGGAACGGC
ACTGGCGAAG ACGCAGTATC TGAGTACAAG AAAGGCGACG AAATCCACGC AGTGGTTCTG
TCTGTTGACC CAGAGCGTGA GCGTATCAGC TTAGGTGTTA AACAAACTGA AGACGACCCA
TTCAACGCTT ACTTAGCTGA CAAGAAGAAA GGTACTATCG TACACGGTAC TGTTTCTGCT
GTTGATGCTA AAGGTGTGAC TGTTGAACTG GCTGACACTG TTGAAGGTTA CATCCGTGTA
GCTGACATCA GCCGTGAGCG CATCGAAGAT GCATCTACTG TTTACTCTGT AGGTGACGCT
ATCGAAGCTA AGTTCATGGG TGTTGACCGT AAGAACCGTT CTATCAGCCT GTCAATCAAA
GCGAAAGACG AAGCTGAAGA AAAAGAAGTG ATGGCGACCT TGAATAAACA AGAAGACGCT
GTTATTAGTA ATGCAATGGC TGAAGCGTTT AAAGCAGCTC GCAAATAA
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| Protein sequence | MTESFADLFE QSLQTLEFRP GSIVRGTVVA IENGMVLVDA GLKSESPIPA EQFKNAQGVL
EIAVGDEVDV ALDSVEDGFG ETQLSREKAK RHEAWIVLEK AYEDAETVIG IINGKVKGGF
TVELNGIRAF LPGSLVDVRP VRDTAHLEYK ELEFKVIKLD QKRNNVVVSR RAVIESESSA
ERDALLENLQ EGQAVKGIVK NLTDYGAFVD LGGVDGLLHI TDMAWKRVKH PSEIVNVGDE
INVKVLKYDR ERTRVSLGLK QLGEDPWLEI SKRYPENTKL TGRVTNLTDY GCFVEIEEGV
EGLVHVSEMD WTNKNIHPSK VVNLGDEVEV LVLDIDEERR RISLGLKQCK TNPWDDFATR
YNKGDKVSGK IKSITDFGIF IGLDGGIDGL VHLSDISWNG TGEDAVSEYK KGDEIHAVVL
SVDPERERIS LGVKQTEDDP FNAYLADKKK GTIVHGTVSA VDAKGVTVEL ADTVEGYIRV
ADISRERIED ASTVYSVGDA IEAKFMGVDR KNRSISLSIK AKDEAEEKEV MATLNKQEDA
VISNAMAEAF KAARK
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