| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_2350 |
|---|
| Symbol | aspC-1 |
|---|
| ID | 1170071 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella oneidensis MR-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004347 |
|---|
| Strand | + |
|---|
| Start bp | 2457429 |
|---|
| End bp | 2458622 |
|---|
| Gene Length | 1194 bp |
|---|
| Protein Length | 397 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 637344188 |
|---|
| Product | aromatic amino acid aminotransferase |
|---|
| Protein accession | NP_717940 |
|---|
| Protein GI | 24373897 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1448] Aspartate/tyrosine/aromatic aminotransferase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATTTTCT CTCAGGTAGT GCTCGCTCCA GCAGATCCCA TCCTTGGTTT AACCGATACT
TTTAAAGCTG ATCCACGTCA AGATAAAGTC AACCTTGGTG TCGGCATTTA TAAGGATGAA
GCAGGGCAGA CTCCGGTATT GCAATCGGTT AAGAAAGCAG AAGCCATACT GCTAGAACAA
GAGAAGACTA AAAACTATTT AGGCATAGAA GGGGTCCAAA CCTACAACCG CGTTGTACAA
GAGTTGTTAT TTGGTGAAGG TAGTGAGCTA GTGGCTTCTG GCCGTGCCGC AACCGCCCAA
GCGCCTGGTG GTACAGGGGC ATTGCGTATA GCCGCCGAGT TTTTATTGAG AAACACGCCA
TCTCGCACTA TTTGGGTAAG TAATCCCACT TGGGCTAACC ATCAAAATAT TTTTGAAACT
GCAGGGTTAA CGGTTAAAGA GTTTGGATAT TACAACGCCA GTGCTCACGA TATCGATTTC
GATGGCATGA TGACCGATCT CGCCAATGCA CAGGCGGGTG ACATTATTCT ACTGCACGGC
TGCTGTCATA ACCCAACGGG TATTGACTTG ACTTTAGCGC AATGGGATTT AGTGGCTAAC
CTCTGTGCTG ACAAACAATT AGTGCCTTTG TTTGACTTTG CTTACCAAGG TTTTGGAACA
GGTATTGAAG AAGATGCTGC AGGCCTGCGT TTAGTCGCTT CAAAAGTTCC TGAGCTGTTA
GTCGCAAATT CTTTCTCTAA AAACTTTGGG CTTTATAATG AACGTATCGG TGCTGTGACT
GTGGTTGCTC ACAATGCAGA TGAAGCTGTT CGCGCTTTTA GCCAAGTGAA ACGTACAATT
CGGGCAAACT ATTCAAATCC CCCAGCCCAT GGTGCGTTAA TTGTTAGCAC CATTTTAAGT
GATGCAGCTT TGAAAGCCCT TTGGGTACAA GAGCTGACCG AAATGCGTGA GCGTATAGCC
CTTATGCGTA CTCTATTTGT GCAGAGCTTA AAAGATGAGG GTGTGACTCA AGATTTTAGC
TTTATTTCGC GCCAAAATGG TATGTTTAGC TTCTCTGGCT TGAATAAGTC GCAAGTGGCC
CGTTTAAAAG ACGAATTTGG AGTTTATATT GTCGGTTCTG GTCGTATTAG TGTGGCGGGT
ATGACGAAAG CCAATATGCC TGCGATCTGT AAAGCGATTG CTCAGGTCGT ATAA
|
|---|
| Protein sequence | MIFSQVVLAP ADPILGLTDT FKADPRQDKV NLGVGIYKDE AGQTPVLQSV KKAEAILLEQ
EKTKNYLGIE GVQTYNRVVQ ELLFGEGSEL VASGRAATAQ APGGTGALRI AAEFLLRNTP
SRTIWVSNPT WANHQNIFET AGLTVKEFGY YNASAHDIDF DGMMTDLANA QAGDIILLHG
CCHNPTGIDL TLAQWDLVAN LCADKQLVPL FDFAYQGFGT GIEEDAAGLR LVASKVPELL
VANSFSKNFG LYNERIGAVT VVAHNADEAV RAFSQVKRTI RANYSNPPAH GALIVSTILS
DAALKALWVQ ELTEMRERIA LMRTLFVQSL KDEGVTQDFS FISRQNGMFS FSGLNKSQVA
RLKDEFGVYI VGSGRISVAG MTKANMPAIC KAIAQVV
|
|---|
| |