| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_2204 |
|---|
| Symbol | |
|---|
| ID | 1169941 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella oneidensis MR-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004347 |
|---|
| Strand | + |
|---|
| Start bp | 2318090 |
|---|
| End bp | 2319025 |
|---|
| Gene Length | 936 bp |
|---|
| Protein Length | 311 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 637344060 |
|---|
| Product | DNA ligase |
|---|
| Protein accession | NP_717802 |
|---|
| Protein GI | 24373759 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1793] ATP-dependent DNA ligase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACTTTAT TGAGAGGCAA AGGAATGGCT CTTACAACTC GCTTACCTTT TGTAAGATTT
ACAGCGCTTA AGTGCTTGGG ATTGATTATT GGACTCTGCT GCGTATTGAT TACCGCAAGC
TTTGCGAGTC CGGCACCGAA TATTCAATTA GCAACGGAAT ATTCGCTCGA TAATCACTCC
AATAATGATG CTCAAATCAG CACATTTTTT GTCAGCGAAA AACTCGATGG TGTACGAGGT
TATTGGGATG GGCAACGCTT ATTCACCCGT CAGGGCAATC CCATTTTGGC CCCGAGTTGG
TTTACCGCCG AGTTTCCTGC CATCGCAATG GATGGTGAGT TATGGCTTGG AAGAGGGCAG
TTTGAGGCGA TATCAGGCTT AATACGTCAA GCATCGCCAA AGGATGCCGA CTGGCAAAAC
GTTCGGTTTA TGGTATTTGA TTTACCAACA ACCAAAGGCA GCTTTGAAGA GCGTTACCAT
AAGATGCAAG CACTTATCGC AGGGAAATCG GTTTATCTGC AAGTGATTGA GCAGTTTAGT
GTCGCCAGTG TTGAAGCCCT GTATCAAACC TTAGATACCT TAGTTGCCCT TGGCGCTGAA
GGGCTAATCT TACATCGTCG TACGGCAATC TATACGCCGG GGCGTAACCC TAATGTGATG
AAATTAAAGC CCTATTTAGA TGCAGAAGCC ACAGTGATTG GTTACATTGC AGGCAAAGGG
CAATTTAGTG GAAAGATGGG GGCCTTAAGG GTACAAACGC CAGATGGTCG TATCTTTAAT
ATTGGCACAG GCTTTAACCT CGCTGAGCGC CAGCATCCCC CAGCCATTGG TACGCTTATC
ACCTACAAGT ATCTTGGCTT AACGGTGAAT GGTTTACCGC GTTTTGCCAG TTACTTACGG
ATCAGAACCG ATATTGACCC AAAGAATAAA GAATAA
|
|---|
| Protein sequence | MTLLRGKGMA LTTRLPFVRF TALKCLGLII GLCCVLITAS FASPAPNIQL ATEYSLDNHS
NNDAQISTFF VSEKLDGVRG YWDGQRLFTR QGNPILAPSW FTAEFPAIAM DGELWLGRGQ
FEAISGLIRQ ASPKDADWQN VRFMVFDLPT TKGSFEERYH KMQALIAGKS VYLQVIEQFS
VASVEALYQT LDTLVALGAE GLILHRRTAI YTPGRNPNVM KLKPYLDAEA TVIGYIAGKG
QFSGKMGALR VQTPDGRIFN IGTGFNLAER QHPPAIGTLI TYKYLGLTVN GLPRFASYLR
IRTDIDPKNK E
|
|---|
| |