Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SO_2013 |
Symbol | dnaX |
ID | 1169765 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella oneidensis MR-1 |
Kingdom | Bacteria |
Replicon accession | NC_004347 |
Strand | + |
Start bp | 2109971 |
End bp | 2112979 |
Gene Length | 3009 bp |
Protein Length | 1002 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 637343888 |
Product | DNA polymerase III, gamma and tau subunits |
Protein accession | NP_717619 |
Protein GI | 24373576 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG2812] DNA polymerase III, gamma/tau subunits |
TIGRFAM ID | [TIGR00678] DNA polymerase III, delta' subunit [TIGR02397] DNA polymerase III, subunit gamma and tau |
|
|
Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGTCATATC AGGTGTTAGC CAGAAAATGG CGCCCTGCCA CATTCGAACA GATGGTCGGC CAAAGCCATG TGTTACACGC GCTCACTAAT GCGTTAACGC AGCAACGTTT ACACCACGCT TATCTTTTTA CAGGTACACG CGGGGTGGGT AAGACCAGCT TGGCACGACT CTTTGCTAAA GGCTTAAACT GTGAAACTGG TGTAACGGCT TCCCCCTGCG GCGTCTGTGG CAGCTGTGTC GAAATCGCCC AAGGTCGTTT TGTTGACTTA ATTGAAGTCG ATGCGGCGTC CCGCACTAAG GTCGATGACA CCCGTGAACT CTTAGATAAT GTGCAATATC GCCCGACCCG AGGCCGTTTT AAGGTTTATC TAATCGATGA AGTGCATATG CTGTCCCGTA GCAGTTTTAA TGCATTGCTT AAAACCCTTG AAGAACCACC CGAGCATGTA AAATTTCTGC TGGCCACTAC CGATCCGCAA AAGCTGCCAG TGACTGTGTT ATCCCGTTGT TTGCAATTTA ATTTAAAGAG CTTAACCCAG CAGGAAATTG GCACTCAGCT ACAACATATT TTAACCCAAG AGCAATTGCC CTTTGAGCAC GAAGCCTTAG GCCTACTCGC CAAATCGGCT AACGGCAGTA TGCGTGATGC CTTAAGTTTG ACCGATCAAG CGATTGCTTT TGGTGGCGGC ACTGTGATGC TCAATCAAGT GCAATCCATG CTCGGTAGTA TTGATGAGCA GCATGTGCTG GGCTTACTCA AAGCCTTAAC TGACGCTGAT ATTGGCGCGT TGATGCAAAG CTGTGCCCAG GTGCTGGCCT ATGGCGCAGA TGCCCAAGAA GTGCTGCGCA GTTTACTGGA ATTACTGCAT CAAATTACCC TGACACAATT TGCGCCCGCG GCGGCGCAGC AATCTCTGTA TAGTGCGCAA ATTCAAGCGT TTGCAGAGCA GTTAGCGCCT GAACAAGTGC AACTGTATTA CCAAATTTTA CTCACGGGCC GCAAAGACTT GCCCCATGCA CCTGATCCTA AGTCAGGGCT TGAAATGGCA TTGCTGCGTG CTGTTGCTTT TGTCCCCGAA AAAAGCGTTA AGCGCTGGCA AGTGGATGAC GCGGTTAAGG TGGATTTGTC TGCCCAACCT GCTTTAACCC CACAAGCTAC AATACCACCA GAGGTTCCAG CGGAGAGACA ACTGGCCGTA AATGCGCCTG TGGCTGAAAA AAAAACGCTG TTAGCAACCG TCGCTAATCC AGAGGCGCAG TTGCAAGCAG AGACAACGCC TGAAACTGCG TTAGAGGATG ATGAGCCTGA ACTTAATGCG GCGCTGATTG CCGAGCAGCA AGTGATCTTA AGCCAAGCCC AAAGCCAAGG TTTTGGCGCA AGTGCTGATC CGGTTGTAAG TTCAAATACG GCGCTTAATC AAGATGTTAA TTCATCAGAT CCTACAGATC CAGATACAGC ATTGACCGAG CAGACTGCTA CTGAAGATGT CTTAGATGCT CAAAATACAG CAGGGGATTT AGCGCCAGAG CCTTATGTAG CAGAAGCATA CGGGCAGTAT GACTATGCTC AATCCAACGA TGCTCAATCC AACTACGCAC AATTCAATCA TGCTCAAAGC TATGATACAT CGACGCCACT TGATGCTTAT CAGGATGATT ACGCGCATTT TATGTCTGAG GATGCAGCTG AGCAGCTTAT TATATCTGAG CATGCAGTAG AGCAACTTAG CGCGAGTGAA GGCAATCTGT TTAGCAATGG CAGCGCCCAA CATAGTGCGT CAAACCAGAC AGGACAAGTG TTTGCCGTCG ATAATACTCA GGTAGCGAAA GCGGCTGTAT CCCTTGAGGA TGACGATATT TTATCGGCAG TATTAGCAGC GCGGGAATCA TTACTGTCGG ATCTCGATGC GTTAAGCACG AAGGATGGTG ATGGAAAAAA GTTATCTCCT GACGTTAAGG CAAAAACGCC GACTTCGAAT GCTCACTCTA GGCCAGCAAC AAGCGTCAAT GTGAGTCCTC GTCCTGGACA AAATGCCGTA ACTTTAGAAT TTGAAAGTGA TTTCGAACTG CCCTTTGACG ATGATTTTGA GGCTGAGATT TATACCAAGC CTGAGTTGAG CACTAAAGCG ACCAATGCGC CGCTTGCACC ACTTAGTACT CGGCCCATAA CCCACTCGAT TATTGTTCCA TCTACTCAGC AAAGTGCAGC AGCGCAGCAT CTGCCGCTTG ATCCCAATGA TCGTCCGCCA TGGGAGGACG CGCCTGTGGC TGAGTGCCAC CATGGGAATG CTGAACCCAT AACGACATCG CGCCAAGTGA ATGAAGAAAG CCATCTGCGC CAAGAAAGTG CAGCGCTTCA CGCGCCTTTA TTGGCAGTTG AGCCTGTTCA GGTTGCACCT GCGCTGACTT TGCCTACAAA TACTCAAGCG GCTCAAGTCG AGCAAGCAGC AGGGCAGAGT CATCAGTTGA ATCACCCTGA TGAAGTACCT GCAACGCCAC CGCGCGAGCT AGACGCCGCC GCGCCGCCTG CGCCTGCAAG TGACCTAACG GTCGCGCAAT CTATCACGGG TCATCCCTTG GATTTACATT GGTACAAGTT AATGGCGAGC CTTGATATTG GCGGCCGTGT GCGCCAATTA GCGGTAAACT CGATTTGTCA GGTGCAGAGC AATCCCTTGC CATTGCTGTT AAAACCGGAT CAAAAACACT TGGCGGCACA GGTGGCTATT GAGCAATTAG AGCAAGCCTT AACCGCAGCC CTTGGTGCTC CAAGGCAGGT TGAAGTGGTC ATCGGAACCG ATCCTAGCCG GGAAACGCCC TTAGAACTGC GTAAGCGTTT TCACCAAGAG TTGCTGCAGC AGGCGCGGCA ATCGCTGATA ATGGATGATA ATGTGCAATG GCTTATCAAC CGCTTTGGGG CTGAGCTTGA AAATGATAGC TTGCTCTATC CACCAGAGCT GTTAAACCAA CGCAGCGGGC TTATCCCTGC GTTACCTGAG CCTGAGTGA
|
Protein sequence | MSYQVLARKW RPATFEQMVG QSHVLHALTN ALTQQRLHHA YLFTGTRGVG KTSLARLFAK GLNCETGVTA SPCGVCGSCV EIAQGRFVDL IEVDAASRTK VDDTRELLDN VQYRPTRGRF KVYLIDEVHM LSRSSFNALL KTLEEPPEHV KFLLATTDPQ KLPVTVLSRC LQFNLKSLTQ QEIGTQLQHI LTQEQLPFEH EALGLLAKSA NGSMRDALSL TDQAIAFGGG TVMLNQVQSM LGSIDEQHVL GLLKALTDAD IGALMQSCAQ VLAYGADAQE VLRSLLELLH QITLTQFAPA AAQQSLYSAQ IQAFAEQLAP EQVQLYYQIL LTGRKDLPHA PDPKSGLEMA LLRAVAFVPE KSVKRWQVDD AVKVDLSAQP ALTPQATIPP EVPAERQLAV NAPVAEKKTL LATVANPEAQ LQAETTPETA LEDDEPELNA ALIAEQQVIL SQAQSQGFGA SADPVVSSNT ALNQDVNSSD PTDPDTALTE QTATEDVLDA QNTAGDLAPE PYVAEAYGQY DYAQSNDAQS NYAQFNHAQS YDTSTPLDAY QDDYAHFMSE DAAEQLIISE HAVEQLSASE GNLFSNGSAQ HSASNQTGQV FAVDNTQVAK AAVSLEDDDI LSAVLAARES LLSDLDALST KDGDGKKLSP DVKAKTPTSN AHSRPATSVN VSPRPGQNAV TLEFESDFEL PFDDDFEAEI YTKPELSTKA TNAPLAPLST RPITHSIIVP STQQSAAAQH LPLDPNDRPP WEDAPVAECH HGNAEPITTS RQVNEESHLR QESAALHAPL LAVEPVQVAP ALTLPTNTQA AQVEQAAGQS HQLNHPDEVP ATPPRELDAA APPAPASDLT VAQSITGHPL DLHWYKLMAS LDIGGRVRQL AVNSICQVQS NPLPLLLKPD QKHLAAQVAI EQLEQALTAA LGAPRQVEVV IGTDPSRETP LELRKRFHQE LLQQARQSLI MDDNVQWLIN RFGAELENDS LLYPPELLNQ RSGLIPALPE PE
|
| |