Gene SO_1938 details

Gene Information

• Locus tag: SO_1938
• Symbol: cobB
• ID: 1169699
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella oneidensis MR-1
• Kingdom: Bacteria
• Replicon accession: NC_004347
• Strand: +
• Start bp: 2042650
• End bp: 2043381
• Gene Length: 732 bp
• Protein Length: 243 aa
• Translation table: 11
• GC content: 48%
• IMG OID: 637343822
• Product: NAD-dependent deacetylase
• Protein accession: NP_717545
• Protein GI: 24373502
• COG category: [K] Transcription
• COG ID: [COG0846] NAD-dependent protein deacetylases, SIR2 family

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTACCAAC ATATTGTGGT ATTAACTGGC GCGGGTATTT CTGCTGAGTC GGGATTACGT 
ACCTTTCGCG ATCAAGATGG TTTGTGGGAA GAGCATCATA TAGAAGATGT GGCAACACCA 
GAAGGCTATG CAAAAGATGC TGAACTCGTC GAACGTTTCT ATAACAGTCG CTGGGAGCAA 
TTACACTGTG GTACTGTGAT GCCTAATGCG GCACATCTTG CATTAGCCAA GTTAGAGGCT 
GAGTTTTCTG GGCAGTTATT GGTTGTAACT CAAAATATTG ATGATTTACA TGAGCGTGCT 
GGATCTCGTC GTTTACTGCA TATGCACGGC GAACTCTCTA AAGGACGCTG TCCGCGCTCG 
CGCCAAACCT TTTTATTAAG AGAACCTTTT GGAGTGAATA ACGGCTGTAC TTGCTGTATT 
CCCGCGCAAA GACTGCGGCC CCATGTGGTG TGGTTTGGCG AAATGCCCTT AGGGATGGAT 
AGAATTCACG ATGCGCTCGA TAACTGTGAT TTATTTATCG CCATTGGTAC CTCGGGCACG 
GTTTATCCTG CTGCGGGTTT TGTCGACACG GCAAATCACC ATGGAGCGCA AACCGTTGAG 
GTCAACCTAC AATCGCCCGA TAGGCATAGC CAATTTCAAT ACCATTTAAC GGGAAGGGCT 
GGGGAACTCG TACCTAAATT AGTGGATACG ATTCTCGCGG GGCGTGTGAT CGGCTCTGAT 
TTGGCCGAAT GA 

 

Protein sequence

MYQHIVVLTG AGISAESGLR TFRDQDGLWE EHHIEDVATP EGYAKDAELV ERFYNSRWEQ 
LHCGTVMPNA AHLALAKLEA EFSGQLLVVT QNIDDLHERA GSRRLLHMHG ELSKGRCPRS 
RQTFLLREPF GVNNGCTCCI PAQRLRPHVV WFGEMPLGMD RIHDALDNCD LFIAIGTSGT 
VYPAAGFVDT ANHHGAQTVE VNLQSPDRHS QFQYHLTGRA GELVPKLVDT ILAGRVIGSD 
LAE