| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_1882 |
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| Symbol | |
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| ID | 1169648 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella oneidensis MR-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004347 |
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| Strand | + |
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| Start bp | 1978320 |
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| End bp | 1981415 |
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| Gene Length | 3096 bp |
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| Protein Length | 1031 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 637343772 |
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| Product | AcrB/AcrD/AcrF family protein |
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| Protein accession | NP_717490 |
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| Protein GI | 24373447 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATCCTGA CCGATCTTTC CGTTAAACGG CCGGTGTTTG CCTCGGTCAT TAGTTTATTG
CTGGTGGCCT TTGGTCTGGT CGCATTCGGT AAATTACCGC TGCGGGAATA CCCCAATATC
GACCCGCCCA TTGTATCGAT TGAAACCAAC TATCGTGGTG CCAGTGCCGC GGTGGTCGAA
AGTCGCATCA CCCAACTGAT TGAGGACAGG ATCAGCGGGG TGGAGGGCAT TCGCCATGTG
AGTTCATCGA GCAGCGATGG TCGCTCACAA GTGACCTTAG AGTTTGATAT TAGTCGTAAT
ATTGAGGATG CGGCTAACGA TGTGCGTGAT AGAATTTCGG GTCTATTAGA TAACTTACCC
GAAGAAGCCG ATCCCCCAGA GGTACAAAAA GCCAACGGTG GCGATGAAGT CATCATGTGG
TTAAATCTTG AGTCGGATCA GATGACCACA TTAGAGCTGA CTGACTACAC CCGCCGTTAT
TTAGCCGACC GTCTGTCTGT GGTAGATGGT GTGTCGATGA TCCGTATTGG TGGTGGCAAA
GTGTACGCCA TGCGCGTCTG GCTCGATAGA CAAGCGTTAG CATCGCGCAG TCTGACGGTT
GCCGATGTTG AAGCCGCACT CAGGGCGGAA AACGTCGAGC TACCCGCAGG TTCGCTTGAG
TCAAAGGAGC GCCATTTTAC CGTGCGTTTA GAGCGTAGCT ATCGCAGCGC GGAGGACTTT
GCCAATTTGG TGATAGTCCA AGGCGAAGAT GGCTATTTGG TCAAGCTTGG CGATGTGGCA
AGGGTGGAAG TTGGCTCAGA TGAAGATCGC ATCATGTTCC GTGGTAATAG GGAGTCCATG
ATTGGACTCG GGGTGTCGAA ACAGTCGACT GCCAATACCT TAGAAGTGGC CCGCGGCGTC
AATGCGTTAG TTGATAAGAT CAATCCTACA TTACCAGCGG GAATGTCAAT TAAGCGCAGC
TACGATAGTT CGGTGTTTAT CGAGGCTTCG ATCAAAGAGG TGTATCAAAC GCTGTTTACC
GCCATGGTGC TGGTGATTAT CGTGATTTAT CTATTCCTTG GTAGCGTACG CGCCATGTTA
ATCCCCGCGA TTACCGTGCC CGTGTCGTTG CTCGGCACAT TTATCGTGCT TTATGCCTTG
GGATATACGA TTAACCTGTT GACGCTGCTG GCGATGATCC TTGCCATCGG GATGGTAGTA
GACGATGCGA TTGTGATGTT AGAAAACATT CACCGCCGTA TCGAAGAAGG GGACTCTCCC
TTAAAAGCCG CCTTCCTTGG CGCCCGTGAA GTGGCATTTG CGGTCATTGC CACCACCTTA
GTGCTGGTGG CGGTATTTAT GCCGATTACG TTCCTTGAAG GGGACTTAGG TAAACTCTTT
AAAGAGTTTG CAGTGGCCAT GAGTGCGGCG GTGATTTTCT CCAGTATTGT GGCGTTAACC
TTAAGCCCGA TGATGTGCGC TAAGCTGCTC AAACCCGCAG AGCAGGACTC ATGGTTAGTG
CGTAAGGTTG ATAGCATTAT GACGGGCATT TCCCGTCGCT ATCAAAGCTC GCTAGAGGGC
GCGATGACAA AACCGGTGCT GATGTTAGTT ATCGTGTTGA TTGCACTTGG GAGCAGCGTG
TTTCTTGCCC AAAAAGTACC GCAGGAATTT GCACCACAGG AGGACCGAGG CTCCTTATTT
TTAATGGTTA ATGGGCCGCA GGGGGCGAGT TACGAGTATA TCGAATCCTA CATGACCGAG
GTGGAAAGCC GTTTAATGCC GCTGGTGGAT TCGGGTGATA TTAAGCGCCT GTTGATCCGC
GCGCCCCGAG GCTTTGGCCG TGCGGCGGAC TTCTCTAACG GGATGGCGAT TATTGTGCTC
GAAGACTGGG GACAACGTCG TCCAATGAAA GAAGTGATTG GCGATATTAA TAAACGTCTC
GCCGATTTAG CCGGTGTGCA AGCTTTCCCT GTGATGCGTC AAGCCTTTGG CCGTGGTGTA
GGCAAACCCG TGCAATTTGT GATTGGTGGG CCAAGCTATG AGGAGCTGGC TGCTTGGCGG
GATATCATGA TGCAAAAGGT GGCGGAAAAT CCTAAACTGC TTGGCCTTGA CCATGATTAT
AAAGAGACCA AACCGCAGCT CAGAGTGGTG ATTGACAGGG ACAGGGCGGC GAGTCTTGGG
GTGTCGATTT CCAATATCGG CCGTACTTTG GAGTCTATGC TAGGCTCCCG CTTAGTCACT
ACCTTTATGC GTGATGGCGA AGAGTACGAT GTGATTGTGG AAGGGGAGCG CAGTAACCAA
AATACTGCGG CCGATCTACA AAATATCTAT GTTCGTTCTG AACGGACGAA GGAGCTGATC
CCATTATCAA ACTTAGTCAC GGTAGAAGAG TTTGCCGATG CCAGTTCGCT TAATCGCTAT
AATCGCATGC GGGCGATTAC CATCGAAGCT AGCTTGGCTG ATGGCTATAG CTTAGGTGAA
GCGCTTGATT ACCTCAATCA AGTCGCGCGG GCTAATTTGC CGGCGGAAGC GGTCATCAGC
TACAAGGGAC AATCGCTGGA TTATCAAGAG TCTGGCAGCT CAATGTACTT TGTGTTCCTG
CTGGCACTCG GGATTGTATT CCTGGTATTA GCCGCGCAGT TTGAAAGCTA TATTCACCCT
ATGGTGATCA TGCTAACGGT ACCGCTTGCC ACGGTTGGCG CCTTGCTCGG GCTGTGGTTT
ACCGGGCAGA GCCTTAATAT CTACAGCCAG ATTGGGATTA TTATGCTGGT CGGTTTAGCG
GCGAAAAACG GTATTTTGAT TGTCGAATTT GCCAACCAGT TGCGGGATAA AGGCGTGGAT
TTTGACCGCG CCATTATCCA AGCCTCTTGC CAGCGTTTAC GGCCGATTCT GATGACGGGA
ATAACTACAG CCGCGGGCGC CGTCCCTCTG GTATTGGCAA CGGGCGCAGG TGCTGAAACC
CGCTTTGTGA TTGGCGTAGT GGTGCTTGCG GGTATTATGC TGGCGACGCT GTTTACCATT
TATGTGATCC CAACTGCTTA CGGTCTCTTT GCCCGTAATA GCGGCTCGCC AGAAGCCATT
GCCCAGCAAT TAGAAAAGGA ATTAGCGCAG GATTAA
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| Protein sequence | MILTDLSVKR PVFASVISLL LVAFGLVAFG KLPLREYPNI DPPIVSIETN YRGASAAVVE
SRITQLIEDR ISGVEGIRHV SSSSSDGRSQ VTLEFDISRN IEDAANDVRD RISGLLDNLP
EEADPPEVQK ANGGDEVIMW LNLESDQMTT LELTDYTRRY LADRLSVVDG VSMIRIGGGK
VYAMRVWLDR QALASRSLTV ADVEAALRAE NVELPAGSLE SKERHFTVRL ERSYRSAEDF
ANLVIVQGED GYLVKLGDVA RVEVGSDEDR IMFRGNRESM IGLGVSKQST ANTLEVARGV
NALVDKINPT LPAGMSIKRS YDSSVFIEAS IKEVYQTLFT AMVLVIIVIY LFLGSVRAML
IPAITVPVSL LGTFIVLYAL GYTINLLTLL AMILAIGMVV DDAIVMLENI HRRIEEGDSP
LKAAFLGARE VAFAVIATTL VLVAVFMPIT FLEGDLGKLF KEFAVAMSAA VIFSSIVALT
LSPMMCAKLL KPAEQDSWLV RKVDSIMTGI SRRYQSSLEG AMTKPVLMLV IVLIALGSSV
FLAQKVPQEF APQEDRGSLF LMVNGPQGAS YEYIESYMTE VESRLMPLVD SGDIKRLLIR
APRGFGRAAD FSNGMAIIVL EDWGQRRPMK EVIGDINKRL ADLAGVQAFP VMRQAFGRGV
GKPVQFVIGG PSYEELAAWR DIMMQKVAEN PKLLGLDHDY KETKPQLRVV IDRDRAASLG
VSISNIGRTL ESMLGSRLVT TFMRDGEEYD VIVEGERSNQ NTAADLQNIY VRSERTKELI
PLSNLVTVEE FADASSLNRY NRMRAITIEA SLADGYSLGE ALDYLNQVAR ANLPAEAVIS
YKGQSLDYQE SGSSMYFVFL LALGIVFLVL AAQFESYIHP MVIMLTVPLA TVGALLGLWF
TGQSLNIYSQ IGIIMLVGLA AKNGILIVEF ANQLRDKGVD FDRAIIQASC QRLRPILMTG
ITTAAGAVPL VLATGAGAET RFVIGVVVLA GIMLATLFTI YVIPTAYGLF ARNSGSPEAI
AQQLEKELAQ D
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