| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_1820 |
|---|
| Symbol | polB |
|---|
| ID | 1169593 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella oneidensis MR-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004347 |
|---|
| Strand | + |
|---|
| Start bp | 1910054 |
|---|
| End bp | 1912480 |
|---|
| Gene Length | 2427 bp |
|---|
| Protein Length | 808 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 637343707 |
|---|
| Product | DNA polymerase II |
|---|
| Protein accession | NP_717428 |
|---|
| Protein GI | 24373385 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0417] DNA polymerase elongation subunit (family B) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGTTGACAC GCCACGCGAT TGCACGAGAT GGCAATCTGT TGTTGCAATA CTATCTCGCT
ACAGAATCGG GCCCTGTGCT GATGGAATTG CCAGACACTG AATACATTTG CTTTTGTCAT
CAAACAGATA TTCAGGCATT GCAGTTACAA ACGCCGGGAT TGGCGCTACG TTTTGTGCCA
CTTGAACTTA AGAGCTTTAA AAGACAAGCC GTGGCGGGGA TTTATGCCAA GTCCAGTAGC
GCATTTCGAA GTTTACAACG GATTGCAAAC GATGCGGGTA TTCCATTATT CGAGGCTGAT
ATTCGCCCTG AGCAGCGTTT TTTAATTGAA CGCTTTGTCG CTCTCGATGT GGCTTTTTTA
GGGCACTATG CTAACAAGAT AGCTAACAAC ATAAAATGTG ACAACGACTC AGCAATTCAG
GCTATTAACA AAAGTGAGAA CAGTCAGGGA CATTTATCGG TTTTCACTGC GATGCGCGCA
AAAGCGATTG CGCCGCAGCC AACGATTAAA TTGCGCTCGA TTTCACTTGA TTTTGAATGC
AGTTTTGATG GTTTACTCTA TTCGGTGGCG CTTTATGGGC GTGACGCTCA GGCTCAACCC
TATGAAAAAG TGATTATGGT GGGTGAGGTG CAATCTGATG CTCCGCAGTA CATCGAATGG
GTGAGCGATG AGGCGATGCT TATTCGTCGG TTGATTGCAT GGTTTGCGGA GTTTGATCCC
GATGTGATCA TTGGTTGGTC TGTGGTGACC TTTGACTTGG CTTTGCTATA TCGCCGAGCT
TTGTTGCATC GCATTCCTTT ACGACTAGGT CGTGGCGGCG CACTACTTGA ATGGAAAGTT
GATAATAAAT TTCGACCTGA AACCTTAAAC TTACCAGGGC GAGTGGTGCT TGACGGTATC
GATTGGTTGA AGGCGGCATT TTATCACTTT GAACGTTTTT CCTTGGAATT TGTCGCCCAA
GCATTGCTCG GTGAAGGCAA AGCGATTCAT GATGTGGAAA ATCGAGTCCA AGAAATCGAC
GCTTTATTTA CTGAAGATAA ACAGTCGCTT GCTCACTATA ATCTGACTGA TAGCCGATTG
GTGTGGGATA TCTTTGAACA TACTCAATTG TGGGATTTTG CCCTCGCACG CGCCGAGTTA
ACCGGATTAG AACTGGGCCG AGTGGGGGCA TCGGTCGCTG CATTTAATCA CTTATACCTA
CCGCATTTAC ACCGTGCTGG TTACGTCGCG CCCGCAGAAC CTGCCAGTCA AGGGATTGAA
AGCCCTGGCG GGTATGTGAT GGATTCTGTC CCTGGCTTTT ATCAGCATAT TTTAGTTTTT
GACTTTAAAA GTCTTTATCC CTCGATAATC CGTACTTTTT TGATCGATCC CAAAGGGCTC
ATTGAAGGCT TGGGCGATGA TTCGCTCGTT TTGGATGAGT CTGAAACCGT TACCGGTTTT
TTAGGGGCTC GTTTTAGTCG GCGACAGCCT ATTTTGCCAA AGCTTATTCA AACACTATCT
GAGCAGCGCG AAAAAGCTAA GCGGGAAGCG AATGCGCCTT TATCGCAAGC GATTAAAATT
ATTATGAATT CACTTTATGG GGTGTTAGGT TCCCAAGGTT GTGTATTCCA TGATGCAAAG
TTGGCGAGCT CCATTACCAT GCGTGGTCAT CAGATTATGA AACAGACTCG CGCTTGGATT
GAGGAGATGG GCTATCAAGT GATTTATGGT GATACCGATT CTACCTTTGT TCACTTAGGT
TATGAGCCTG ATTTAAGTGA TATTTCTGCC TTAGGTAAAC AGATTGCCGC GCAAATAAAT
GCAAACTGGC AGGCTAAAAT CACCAAGGAC TTTGAGCTAG AAAGTTTTCT CGAGTTACAG
TTTGAGCGGC ACTACGAGCA GTTTTTCATG CCAACCTTGA GGGGCTCTGA GGAGGGAAGT
AAAAAGCGCT ATGTTGGCGC TTGGCGTAAT GTGAGCGGCG AGTTGGAAAT CACTTTTAAG
GGGATGGAAC AGGTTCGAAG TGATTGGAGC CCTTTAGCGA GAAAGGTTCA GGCCGAACTC
TATGAGCGAA TGTTCAATCA GCGAGATATT AGCGGTTATC TCGCGGATGT CATAGGCGAA
CTTCAGGCCG GAAAACGGGA TGATGAGCTG ATCTTTAGTA AGCGAATGCG TCGAAATCTC
GAAGAATACA CTGCCAAATC CTCCCCCCAT GTGAAAGTCG CACGGCAGCT TTGTGAATTA
ACCGGCAAGG CATCCTATAG CAAGAGAGGT GCACAGATTG ATTATGTCAT CACGGTAAAC
GGTCCTGAGC CAGTTTCCCA TAGATCGTCT ACAATTGACT ATCAGTATTA CATTGATAAA
CAAATCGGTC CTATTGCTGA GCCTGTTTTT TCAATAATGA AATTAAATTA CACTAATATT
GCCTCAAAAC AGCTGTCGTT AATTTGA
|
|---|
| Protein sequence | MLTRHAIARD GNLLLQYYLA TESGPVLMEL PDTEYICFCH QTDIQALQLQ TPGLALRFVP
LELKSFKRQA VAGIYAKSSS AFRSLQRIAN DAGIPLFEAD IRPEQRFLIE RFVALDVAFL
GHYANKIANN IKCDNDSAIQ AINKSENSQG HLSVFTAMRA KAIAPQPTIK LRSISLDFEC
SFDGLLYSVA LYGRDAQAQP YEKVIMVGEV QSDAPQYIEW VSDEAMLIRR LIAWFAEFDP
DVIIGWSVVT FDLALLYRRA LLHRIPLRLG RGGALLEWKV DNKFRPETLN LPGRVVLDGI
DWLKAAFYHF ERFSLEFVAQ ALLGEGKAIH DVENRVQEID ALFTEDKQSL AHYNLTDSRL
VWDIFEHTQL WDFALARAEL TGLELGRVGA SVAAFNHLYL PHLHRAGYVA PAEPASQGIE
SPGGYVMDSV PGFYQHILVF DFKSLYPSII RTFLIDPKGL IEGLGDDSLV LDESETVTGF
LGARFSRRQP ILPKLIQTLS EQREKAKREA NAPLSQAIKI IMNSLYGVLG SQGCVFHDAK
LASSITMRGH QIMKQTRAWI EEMGYQVIYG DTDSTFVHLG YEPDLSDISA LGKQIAAQIN
ANWQAKITKD FELESFLELQ FERHYEQFFM PTLRGSEEGS KKRYVGAWRN VSGELEITFK
GMEQVRSDWS PLARKVQAEL YERMFNQRDI SGYLADVIGE LQAGKRDDEL IFSKRMRRNL
EEYTAKSSPH VKVARQLCEL TGKASYSKRG AQIDYVITVN GPEPVSHRSS TIDYQYYIDK
QIGPIAEPVF SIMKLNYTNI ASKQLSLI
|
|---|
| |