| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_1798 |
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| Symbol | ppiD |
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| ID | 1169571 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella oneidensis MR-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004347 |
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| Strand | + |
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| Start bp | 1887238 |
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| End bp | 1889103 |
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| Gene Length | 1866 bp |
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| Protein Length | 621 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 637343686 |
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| Product | peptidyl-prolyl cis-trans isomerase D |
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| Protein accession | NP_717407 |
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| Protein GI | 24373364 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0760] Parvulin-like peptidyl-prolyl isomerase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTAGAAA AGATCCGCGA TGGTTCGCAA GGCGTGATTG CTAAAGGCAT TCTCGTACTT
GTGATTTTAT CTTTTGCATT TGCAGGCGTG AGTAGCTATT TAGGCTCAAC CTCCGAAGTC
CCTGCTGCAG AAGTCAACGG TGATAAGATC ACTAAAGCCG AGTTAGAACA AGCCTATCAG
AGCGAACGTG CTCGTATGGA ACAACAACTG GGTGAAATGT TTGCTGCGTT ATCTGCTGAC
GAAAGATACC TAGAAAGCAT TAAGCAGAGC GTACTCGAAC GTTTAGTGGC CGACAAACTG
ATCGATCAAG CTGCCGCTGC GATGGGGCTG CGCGTTTCTG ACGAGCAAAT TATTGAGGCG
ATTAAATCCG AACCCGCTTT CCAAACTGAC GGTAAATTTG ATAACGAGCG TTATCAAGCC
ATTTTGCGCC AGTTAGGTTA TCAACCACAA ACCTTCAGAA GCATGATGCG CGTAGATATG
ACTCGTCGTC AGCTAACGGC TGCTTTGGTT GGAACTGAAT TTGTTTTACC CGGTGAAGCA
AAACAGCTAG CAGAGCTGCA AGGTCAAACT CGTGACATTC GTTATTTGGT CGTTGATTCT
GCGCCATTCT TAGCCAAGGC ATCTGTAACC GATGAGCAAG TGAAAAGTTA CTATGACGCT
AACCAAGGGC AATTTATGAG CCCAGAGAAG GTGAGCTTAG AGTATGTTGA ATTAAATGCG
GCGGATTTTG CCAAAGACAG TAAAGTGACT GATGAAGAAG CGCAGACTTA CTATGATGAG
CATAAAGCCC AATACGTTTC TAACGAAAAA CGTTTAGCTG CGCATATCTT AATTGCTCTT
GGTAGTGATG AGGCGGCCGC GAAAGCCAAA GCGGAAGATT TAGCTAAGCA ACTCGATAAC
GGTGCTGATT TTGCTGCGTT AGCCAAAGCG AACTCTGAAG ATACCTTGAG TGCAGAGCAA
GGCGGTAAAT TAGACTGGTT TGAACCCGGT GTAATGGACC CAACATTCGA TACTGCACTT
TTTGCATTGC AAAAAGGTCA GCATTCAGGT GTAGTGAAAA CTGATTTTGG TTTCCATATC
ATTAAACTGT TGGACATTCA GCCTGGTACC ACAGTGCCAT TTGCTGATGT CAAAACGAAG
ATTTTTGCTC AGTTGCAAGA GAAAAAAGCG GTAGATCAAT TCTATAGCCT GCAAAGCAAA
TTGGCCGATA CCAGCTACGA AGTACCTGAT ACTTTAGCCG AAACCGCGAA AGTGGTTGGT
GTTGAGATCA AGACAACACC GCTATTTTCA CGTGATGATG TGCCAGCAGC GCTGAATAAG
CCCGATGTCG TTAAAGCAGC ATTTTCAGAC CCAGTGATGC GTCAAGGGCT AAACAGTGAA
GTGATTGAGC TTGAGCCTAA TCATGTAGTG GTTATTCGCA TGAAAGAACA TCACGATGCC
GGTACTATGC CATTAGCAGA AGTGAAAGCG GATATTGCGG AGCGTTTAAA GCAAGAACAA
GCAAACGAAG CGGCACGTGC TAAAGCTGAA GAGTTAATGG CACAAGTCAA AGCAGGCGCA
GCTGATGTGA GCTTAACCGC TAAGACTAAG TTGGGTCGTG GTGCACAAGA TGTCGATGCT
GCTATTGTGG GTAAAGCCTT CCAAATGCCA ACACCGAGTG CTGCACCAGT AGTAGGTACT
GTTGGTTTAG CAAACGGTTA CGCTGTGGTA GCTCTGGATA AAGTCAATGC GGCTGATTCT
GTTAGTGATG AATTAGTCAA TGCGCTTAAA CAACGCTTAA ATGCACAATA CAGCGAAGCG
GATTACCGTG GTTTGATTGA GTCACTTAAA GCAAATGCGA AAGTGCTCTA TCCTGTAGAA
GGTTAA
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| Protein sequence | MLEKIRDGSQ GVIAKGILVL VILSFAFAGV SSYLGSTSEV PAAEVNGDKI TKAELEQAYQ
SERARMEQQL GEMFAALSAD ERYLESIKQS VLERLVADKL IDQAAAAMGL RVSDEQIIEA
IKSEPAFQTD GKFDNERYQA ILRQLGYQPQ TFRSMMRVDM TRRQLTAALV GTEFVLPGEA
KQLAELQGQT RDIRYLVVDS APFLAKASVT DEQVKSYYDA NQGQFMSPEK VSLEYVELNA
ADFAKDSKVT DEEAQTYYDE HKAQYVSNEK RLAAHILIAL GSDEAAAKAK AEDLAKQLDN
GADFAALAKA NSEDTLSAEQ GGKLDWFEPG VMDPTFDTAL FALQKGQHSG VVKTDFGFHI
IKLLDIQPGT TVPFADVKTK IFAQLQEKKA VDQFYSLQSK LADTSYEVPD TLAETAKVVG
VEIKTTPLFS RDDVPAALNK PDVVKAAFSD PVMRQGLNSE VIELEPNHVV VIRMKEHHDA
GTMPLAEVKA DIAERLKQEQ ANEAARAKAE ELMAQVKAGA ADVSLTAKTK LGRGAQDVDA
AIVGKAFQMP TPSAAPVVGT VGLANGYAVV ALDKVNAADS VSDELVNALK QRLNAQYSEA
DYRGLIESLK ANAKVLYPVE G
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