| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_1778 |
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| Symbol | omcB |
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| ID | 1169552 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella oneidensis MR-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004347 |
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| Strand | - |
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| Start bp | 1859345 |
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| End bp | 1861360 |
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| Gene Length | 2016 bp |
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| Protein Length | 671 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 637343664 |
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| Product | decaheme cytochrome c |
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| Protein accession | NP_717387 |
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| Protein GI | 24373344 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | [TIGR03507] decaheme c-type cytochrome, OmcA/MtrC family |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATGAACG CACAAAAATC AAAAATCGCA CTGCTGCTCG CAGCAAGTGC CGTCACAATG
GCCTTAACCG GCTGTGGTGG AAGCGATGGT AATAACGGCA ATGATGGTAG TGATGGTGGT
GAGCCAGCAG GTAGCATCCA GACGTTAAAC CTAGATATCA CTAAAGTAAG CTATGAAAAT
GGTGCACCTA TGGTCACTGT TTTCGCCACT AACGAAGCCG ACATGCCAGT GATTGGTCTC
GCAAATTTAG AAATCAAAAA AGCACTGCAA TTAATACCGG AAGGGGCGAC AGGCCCAGGT
AATAGCGCTA ACTGGCAAGG CTTAGGCTCA TCAAAGAGCT ATGTCGATAA TAAAAACGGT
AGCTATACCT TTAAATTCGA CGCCTTCGAT AGTAATAAGG TCTTTAATGC TCAATTAACG
CAACGCTTTA ACGTTGTTTC TGCTGCGGGT AAATTAGCAG ACGGAACGAC CGTTCCCGTT
GCCGAAATGG TTGAAGATTT CGACGGCCAA GGTAATGCGC CGCAATATAC AAAAAATATC
GTTAGCCACG AAGTATGTGC TTCTTGCCAC GTAGAAGGTG AAAAGATTTA TCACCAAGCT
ACTGAAGTCG AAACTTGTAT TTCTTGCCAC ACTCAAGAGT TTGCGGATGG TCGCGGCAAA
CCCCATGTCG CCTTTAGTCA CTTAATTCAC AATGTGCATA ATGCCAACAA AGCTTGGGGC
AAAGACAATA AAATCCCTAC AGTTGCACAA AATATTGTCC AAGATAATTG CCAAGTTTGT
CACGTTGAAT CCGACATGCT CACCGAGGCA AAAAACTGGT CACGTATTCC AACAATGGAA
GTCTGTTCTA GCTGTCACGT AGACATCGAT TTTGCTGCGG GTAAAGGCCA CTCTCAACAA
CTCGATAACT CCAACTGTAT CGCCTGCCAT AACAGCGACT GGACTGCTGA GTTACACACA
GCCAAAACCA CCGCAACTAA GAACTTGATT AATCAATACG GTATCGAGAC TACCTCGACA
ATTAATACCG AAACTAAAGC AGCCACAATT AGTGTTCAAG TTGTAGATGC GAACGGTACT
GCTGTTGATC TCAAGACCAT CCTGCCTAAA GTGCAACGCT TAGAGATCAT CACCAACGTT
GGTCCTAATA ATGCAACCTT AGGTTATAGT GGCAAAGATT CAATATTTGC AATCAAAAAT
GGAGCTCTTG ATCCAAAAGC TACTATCAAT GATGCTGGCA AACTGGTTTA TACCACTACT
AAAGACCTCA AACTTGGCCA AAACGGCGCA GACAGCGACA CAGCATTTAG CTTTGTAGGT
TGGTCAATGT GTTCTAGCGA AGGTAAGTTT GTAGACTGTG CAGACCCTGC ATTTGATGGT
GTTGATGTAA CTAAGTATAC CGGCATGAAA GCGGATTTAG CCTTTGCTAC TTTGTCAGGT
AAAGCACCAA GTACTCGCCA CGTTGATTCT GTTAACATGA CAGCCTGTGC CAATTGCCAC
ACTGCTGAGT TCGAAATTCA CAAAGGCAAA CAACATGCAG GCTTTGTGAT GACAGAGCAA
CTATCACACA CCCAAGATGC TAACGGTAAA GCGATTGTAG GCCTTGACGC ATGTGTGACT
TGTCATACTC CTGATGGCAC CTATAGCTTT GCCAACCGTG GTGCGCTAGA GCTAAAACTA
CACAAAAAAC ACGTTGAAGA TGCCTACGGC CTCATTGGTG GCAATTGTGC CTCTTGTCAC
TCAGACTTCA ACCTTGAGTC TTTCAAGAAG AAAGGCGCAT TGAATACTGC CGCTGCAGCA
GATAAAACAG GTCTATATTC TACGCCGATC ACTGCAACTT GTACTACCTG TCACACAGTT
GGCAGCCAGT ACATGGTCCA TACGAAAGAA ACCCTGGAGT CTTTCGGTGC AGTTGTTGAT
GGCACAAAAG ATGATGCTAC CAGTGCGGCA CAGTCAGAAA CCTGTTTCTA CTGCCATACC
CCAACAGTTG CAGATCACAC TAAAGTGAAA ATGTAA
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| Protein sequence | MMNAQKSKIA LLLAASAVTM ALTGCGGSDG NNGNDGSDGG EPAGSIQTLN LDITKVSYEN
GAPMVTVFAT NEADMPVIGL ANLEIKKALQ LIPEGATGPG NSANWQGLGS SKSYVDNKNG
SYTFKFDAFD SNKVFNAQLT QRFNVVSAAG KLADGTTVPV AEMVEDFDGQ GNAPQYTKNI
VSHEVCASCH VEGEKIYHQA TEVETCISCH TQEFADGRGK PHVAFSHLIH NVHNANKAWG
KDNKIPTVAQ NIVQDNCQVC HVESDMLTEA KNWSRIPTME VCSSCHVDID FAAGKGHSQQ
LDNSNCIACH NSDWTAELHT AKTTATKNLI NQYGIETTST INTETKAATI SVQVVDANGT
AVDLKTILPK VQRLEIITNV GPNNATLGYS GKDSIFAIKN GALDPKATIN DAGKLVYTTT
KDLKLGQNGA DSDTAFSFVG WSMCSSEGKF VDCADPAFDG VDVTKYTGMK ADLAFATLSG
KAPSTRHVDS VNMTACANCH TAEFEIHKGK QHAGFVMTEQ LSHTQDANGK AIVGLDACVT
CHTPDGTYSF ANRGALELKL HKKHVEDAYG LIGGNCASCH SDFNLESFKK KGALNTAAAA
DKTGLYSTPI TATCTTCHTV GSQYMVHTKE TLESFGAVVD GTKDDATSAA QSETCFYCHT
PTVADHTKVK M
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