Gene SO_1638 details

Gene Information

• Locus tag: SO_1638
• Symbol: ompH
• ID: 1169432
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella oneidensis MR-1
• Kingdom: Bacteria
• Replicon accession: NC_004347
• Strand: +
• Start bp: 1721474
• End bp: 1721980
• Gene Length: 507 bp
• Protein Length: 168 aa
• Translation table: 11
• GC content: 42%
• IMG OID: 637343546
• Product: outer membrane protein OmpH
• Protein accession: NP_717249
• Protein GI: 24373206
• COG category: [M] Cell wall/membrane/envelope biogenesis
• COG ID: [COG2825] Outer membrane protein

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

TTGAACAAGA TGGTAAACCG TGCCCTGGTG ACGTTAGCTT TATTAGGTGC ACCTTTAGCG 
GCGCAAGCAG AAAATATTGC TGTAGTTGAT ATGGGCGCTG TGTTTGAGCA GTTACCTCAA 
CGTGAGCAAA TCATGCAATC TCTGAAGTCA GAGTTTGGTG ATCGCATGTC TGAAGTTCAG 
AAAATGCAAG AAGAAATGCG CTCTCTGATG GAGAAGCAGC AACGTGATGG CGCGTTAATG 
AATGACACGC AAAAAACTGA GCTGGTTCGT AAAATGGAAG CGTTAAAATC TGAATATCAG 
TTGAAAGGTA AAGCGTTGGA TGAAGACTTA CGTCGTCGCC AAGGTGAAGA GCAAAACAAA 
CTGTTAGTGA AGGTTCAAAA AGCCATTAAC ACTATCGCTG AAAAAGAAAA ATACGATTTA 
GTTTTACAGC GTGGTGCAGT CATTTATGTT AAGCCAAACG CTGACATCAG TGGCAAAGTG 
GTTGAAGCCT TAAGCAAAGG CAAGTAA 

 

Protein sequence

MNKMVNRALV TLALLGAPLA AQAENIAVVD MGAVFEQLPQ REQIMQSLKS EFGDRMSEVQ 
KMQEEMRSLM EKQQRDGALM NDTQKTELVR KMEALKSEYQ LKGKALDEDL RRRQGEEQNK 
LLVKVQKAIN TIAEKEKYDL VLQRGAVIYV KPNADISGKV VEALSKGK