Gene SO_1336 details

Gene Information

• Locus tag: SO_1336
• Symbol: nhaA
• ID: 1169157
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella oneidensis MR-1
• Kingdom: Bacteria
• Replicon accession: NC_004347
• Strand: +
• Start bp: 1393979
• End bp: 1395148
• Gene Length: 1170 bp
• Protein Length: 389 aa
• Translation table: 11
• GC content: 46%
• IMG OID: 637343280
• Product: pH-dependent sodium/proton antiporter
• Protein accession: NP_716956
• Protein GI: 24372914
• COG category: [P] Inorganic ion transport and metabolism
• COG ID: [COG3004] Na+/H+ antiporter
• TIGRFAM ID: [TIGR00773] Na+/H+ antiporter NhaA

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGAAAAAG CAATTAGAAA TTTTTTGAGC CAAGAGTCGG CAGGTGGCAT CCTCTTATTA 
ATTGCCGTGG CCTTTGCCAT GTTAATGGCG AATTCTCCTC TGGCTGGATT CTATCAAGGT 
TTTCTCGGTA CTGAAGTTCA AGTACGAGTT GGCGCGCTCG ATCTGCATAA GCCATTGTTG 
TTGTGGATTA ACGATGGTTT GATGGCATTG TTTTTCTTGC TGATTGGTTT AGAAGTTAAA 
CGTGAGCTAT TGGAAGGGGC ACTATCGAGT GTGGCTCAGG CCTCATTGCC AACCTTCGCA 
GCCATTGGTG GCATGTTAGT GCCAGCGGGT ATTTACCTGT TATTTAACTA TGGCGATCCT 
ATCACACAAG CAGGTTGGGC AATCCCAGCT GCGACAGATA TTGCTTTTGC TTTGGGGATC 
ATGGCTTTAC TGGGTAGCCG CGTGCCTGTG GCGTTAAAGG TTTTCCTGCT GGCGTTAGCC 
ATCATTGACG ATTTAGGCGT TATTGTGATT ATCGCGCTTT TCTACAGCAG TGATCTATCA 
ACCGTTAGCT TAATTATTGC CAGCATTGCG ATTGTTGGTT TGGTTGCCTT AAACCGCAAG 
GGCGTGACCT CATTAGCCCC TTATGGAGTA CTCGGACTAA TTCTGTGGGT GGCTGTACTT 
AAGTCTGGTG TGCATGCCAC ATTAGCGGGT GTCATTATTG CTTTCTGTAT TCCTCTGCGA 
GCAAAAGATG GCAGTTCGCC TTCTGAGCAT TTAGAGCATA GTTTGCATCC TTGGAGCACT 
TTCCTGATCC TGCCAGTGTT CGCCTTCGCC AATGCTGGGG TCGCTTTAGG AAACATGAGT 
TTAGATACGC TAATGTCCCC TGTACCAGTG GGGATTGCAT TGGGACTCAT GCTAGGTAAG 
CCGATTGGTG TGATGTTGTT TAGTTTTGTC GCCGTCAAAC TTAAGTTAGC ACAATTGCCT 
GATGGTATTG GTTGGAAACA AATTGCGCCA GTGGCAGCGA TGTGTGGTAT CGGTTTTACC 
ATGTCAATGT TTATTGCTTC GTTGGCATTT GAGCAGGCAG ACCCTATGTT TGGTGATTTA 
GCACGCCTAG GCACCTTAAT GGGCTCAATT TTTGCGGCCT TAATCGGGTA TTTCTGGTTA 
TCAAAAGTGT TACCTAAAAA AGGAGTATAA 

 

Protein sequence

MEKAIRNFLS QESAGGILLL IAVAFAMLMA NSPLAGFYQG FLGTEVQVRV GALDLHKPLL 
LWINDGLMAL FFLLIGLEVK RELLEGALSS VAQASLPTFA AIGGMLVPAG IYLLFNYGDP 
ITQAGWAIPA ATDIAFALGI MALLGSRVPV ALKVFLLALA IIDDLGVIVI IALFYSSDLS 
TVSLIIASIA IVGLVALNRK GVTSLAPYGV LGLILWVAVL KSGVHATLAG VIIAFCIPLR 
AKDGSSPSEH LEHSLHPWST FLILPVFAFA NAGVALGNMS LDTLMSPVPV GIALGLMLGK 
PIGVMLFSFV AVKLKLAQLP DGIGWKQIAP VAAMCGIGFT MSMFIASLAF EQADPMFGDL 
ARLGTLMGSI FAALIGYFWL SKVLPKKGV