Gene SO_1284 details

Gene Information

• Locus tag: SO_1284
• Symbol: rpoD
• ID: 1169104
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella oneidensis MR-1
• Kingdom: Bacteria
• Replicon accession: NC_004347
• Strand: -
• Start bp: 1335571
• End bp: 1337421
• Gene Length: 1851 bp
• Protein Length: 616 aa
• Translation table: 11
• GC content: 48%
• IMG OID: 637343229
• Product: RNA polymerase sigma-70 factor
• Protein accession: NP_716906
• Protein GI: 24372864
• COG category: [K] Transcription
• COG ID: [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
• TIGRFAM ID: [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain; [TIGR02937] RNA polymerase sigma factor, sigma-70 family

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGATCATA CTCCGCAGTC GCAACTCAAG CTGTTGCTTG CCAAAGGTAA AGAGCAAGGT 
TACTTAACCT ATGCAGAAGT GAACGACCAC TTACCTGCAG ACATGGTCGA TTCTGACCAG 
ATCGAAGATA TTATCCAGAT GATAAATGAC ATGGGTATTC GGGTATTCGA AGAGGCTCCC 
GACGCCGATG ACATGATGAT GTCGGAAGAC AACACAGACG AAGATGCAGC AGAAGAAGCC 
GCAGCAGCCC TTGCCACGGT AGAAAGTGAG CTTGGCCGCA CCACAGACCC TGTGCGTATG 
TACATGCGCG AAATGGGTAC CGTTGAACTG CTGACTCGCG AAGGCGAAAT TGTTATCGCC 
AAGCGCATCG AAGAAGGCAT TAACACAGTT CAAAGCTCTG TCGCCGAGTA CCCACAAGCG 
ATCGCCATGA TCCTTGAGCA GTACGACCAG TACGAAGCCG ACGAACTGCG CCTGTCTGAT 
ATTATCTCTG GATTTGTTAA CCCTGACGAA GAAGACCTCG GTCCAACCGC AACCCACATC 
GGTTCTGAAT TATCAGAAGA AGATCTTGAA GATGAAGATG ACGAGGAAGA CGATGAAGAC 
GAAGACGGTG ATGGCGACGG TGATGATGAT GGCAATAAAG GCCCCGATCC TGAAGAGGCT 
CGTGAGCGTT TTAGCCAACT AAGAACTGCC TACGAAAGCG CGCTTAAAAT TATTGACGCC 
AAAGGCCGTG AACATCCTGA GTCGATTCAA GCACTGTTTG AAATCGGCGA GATTTTCAAA 
GAGTTCCGCT TAGTACCTAA GCAGTTCGAT CGCTTAGTGA AAAGCATGCG TTCTATGATG 
GACCGTGTTC GCGTACAAGA GCGTCTACTA ATGAAGCTTT GTGTCGAACA GGCCAAAATG 
CCGAAGAAAA ATTTTGTTAA GTTCTTCACA GGTAATGAGA CCAACCTCGA TTGGTTCGAG 
GCCGAAAAAA CCTCAAACAA ACCTTATGCC GAAGGCTTAA GAATGGTTGA GGAAGACGTA 
CAACGTTGCC GTAGCAAGCT GGCCGCCATC GAAGAAGAAA CCGGTTTAGT CATTGCCGCG 
ATTAAAGATA TTAACCGCCG TATGTCAATC GGTGAAGCCA AGGCTCGCCG TGCGAAGAAA 
GAAATGGTTG AGGCAAACTT ACGTTTGGTT ATTTCTATCG CCAAGAAATA CACCAACCGT 
GGCCTGCAAT TCTTGGACTT GATCCAAGAA GGTAATATCG GTCTGATGAA GGCCGTTGAT 
AAATTTGAAT ATCGCCGTGG TTATAAGTTC TCGACCTATG CAACTTGGTG GATCCGTCAG 
GCAATCACCC GCTCAATCGC GGACCAAGCC CGTACGATCC GTATTCCAGT ACATATGATC 
GAAACGATCA ACAAGCTGAA CCGTATCTCT CGCCAAATGC TACAGGAAAT GGGCCGTGAA 
CCCTCACCTG AAGAACTGGC AGAGCGTATG ATGATGCCGG AAGATAAGAT CCGTAAGGTA 
CTGAAAATCG CTAAAGAACC TATCTCCATG GAAACCCCAA TCGGTGACGA TGAAGATTCG 
CATTTAGGCG ATTTTATCGA GGATACTACC CTCGAATTAC CACTGGACAG CGCCACCAGC 
GAAAGCCTGA AGAGCGCCAC CCATGAGGTA TTAGCAGGCC TAACAGCCCG TGAAGCAAAA 
GTGCTGCGCA TGCGTTTTGG TATCGATATG AATACCGACC ACACACTTGA AGAAGTGGGT 
AAGCAATTTG ACGTGACCCG TGAACGTATT CGTCAAATTG AAGCAAAAGC ACTACGTAAA 
CTGCGCCACC CTTCACGCTC AGAAATCTTA AAGTCCTTCT TAGACGAATA G 

 

Protein sequence

MDHTPQSQLK LLLAKGKEQG YLTYAEVNDH LPADMVDSDQ IEDIIQMIND MGIRVFEEAP 
DADDMMMSED NTDEDAAEEA AAALATVESE LGRTTDPVRM YMREMGTVEL LTREGEIVIA 
KRIEEGINTV QSSVAEYPQA IAMILEQYDQ YEADELRLSD IISGFVNPDE EDLGPTATHI 
GSELSEEDLE DEDDEEDDED EDGDGDGDDD GNKGPDPEEA RERFSQLRTA YESALKIIDA 
KGREHPESIQ ALFEIGEIFK EFRLVPKQFD RLVKSMRSMM DRVRVQERLL MKLCVEQAKM 
PKKNFVKFFT GNETNLDWFE AEKTSNKPYA EGLRMVEEDV QRCRSKLAAI EEETGLVIAA 
IKDINRRMSI GEAKARRAKK EMVEANLRLV ISIAKKYTNR GLQFLDLIQE GNIGLMKAVD 
KFEYRRGYKF STYATWWIRQ AITRSIADQA RTIRIPVHMI ETINKLNRIS RQMLQEMGRE 
PSPEELAERM MMPEDKIRKV LKIAKEPISM ETPIGDDEDS HLGDFIEDTT LELPLDSATS 
ESLKSATHEV LAGLTAREAK VLRMRFGIDM NTDHTLEEVG KQFDVTRERI RQIEAKALRK 
LRHPSRSEIL KSFLDE