Gene SO_1272 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSO_1272 
Symbol 
ID1169092 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella oneidensis MR-1 
KingdomBacteria 
Replicon accessionNC_004347 
Strand+ 
Start bp1320801 
End bp1321706 
Gene Length906 bp 
Protein Length301 aa 
Translation table11 
GC content43% 
IMG OID637343217 
Productpolyamine ABC transporter, permease protein 
Protein accessionNP_716895 
Protein GI24372853 
COG category[E] Amino acid transport and metabolism 
COG ID[COG1176] ABC-type spermidine/putrescine transport system, permease component I 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAGATAA AGTCAAAACT CAAATGGCTT AAAGGACGTT TCTGGACGAT TAGCTTCCCT 
TATGCTTGGC TATTGCTGTT CTTTGCCTTG CCCTTTGCGA TCGTTTTTAA GATCAGTTTG 
TCTACGGCGG CGATTGCTAT CCCGCCCTAT GAAGCGACCT TTCAATATGC AGATGATGTG 
TTAAATATCT TTCTGCACTT AGGTAACTAT TTAATGTTGC TCGATGATCC GTTGTACTAC 
ACAGCGTATC TCAGTTCACT AAAAATGGCC CTAGTATCAA CAATCGGTTG TTTGATTATC 
GGCTATCCCA TGGCCTATGC CATTGCCCGC GCACCTGCCA GATGGCAGAC CGTTTTACTG 
CTATTGGTGA TGCTACCTTC ATGGACCTCA TTTTTAATCC GGGTTTACGC TTGGATGGGG 
ATCTTAAGTA ATACAGGCAT TATCAATAAC TCGTTAATGT GGCTTGGGAT TATTTCTGAG 
CCATTGCAAA TATTAAACAC CAATATTGCT GTGTATATCG GGATTATTTA TGCCTATTTA 
CCCTTTATGA TCCTGCCGCT ATACGCGACT TTAGTTAAGT TGGACATGAG TTTAATTGAG 
GCTGCATCGG ATCTTGGCTC AAGCCGTATC AATACCTTCT GGAAAATCAC TTTCCCGTTA 
TCTAAGAGTG GGGTGATTGC AGGTTCTATG CTGGTGTTTA TTCCGGCGGT AGGTGAGTTT 
GTGATCCCTG AGCTACTCGG CGGCCCAGAT TCCTTAATGA TAGGTAAAGT ATTGTGGCAG 
GAGTTCTTCA ATAACCGTGA TTGGCCGGTA GCCTCATCAC TGGCAATTGT GATGCTAGTA 
CTACTGATTA TTCCTATTAC CTTATTCCAT CGCTATCAAG CGCGTAGTTT GGAGAAAGAC 
CTATGA
 
Protein sequence
MKIKSKLKWL KGRFWTISFP YAWLLLFFAL PFAIVFKISL STAAIAIPPY EATFQYADDV 
LNIFLHLGNY LMLLDDPLYY TAYLSSLKMA LVSTIGCLII GYPMAYAIAR APARWQTVLL 
LLVMLPSWTS FLIRVYAWMG ILSNTGIINN SLMWLGIISE PLQILNTNIA VYIGIIYAYL 
PFMILPLYAT LVKLDMSLIE AASDLGSSRI NTFWKITFPL SKSGVIAGSM LVFIPAVGEF 
VIPELLGGPD SLMIGKVLWQ EFFNNRDWPV ASSLAIVMLV LLIIPITLFH RYQARSLEKD 
L