Gene SO_1214 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSO_1214 
Symbol 
ID1169042 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella oneidensis MR-1 
KingdomBacteria 
Replicon accessionNC_004347 
Strand
Start bp1260899 
End bp1262197 
Gene Length1299 bp 
Protein Length432 aa 
Translation table11 
GC content46% 
IMG OID637343167 
ProductNupC family protein 
Protein accessionNP_716837 
Protein GI24372795 
COG category[F] Nucleotide transport and metabolism 
COG ID[COG1972] Nucleoside permease 
TIGRFAM ID[TIGR00804] nucleoside transporter 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAATATAT TGATGAGCTT AGTAGGGGTG GTCGTCCTAC TTGCGATAGG TTTCCTCCTA 
TCGAATAACA AAAAAGCAAT TAATTTACGT ACAGTGGGTG GAGCATTAGC CATCCAGGCT
GCCTTCGGTG GTTTTGTACT GTACGTTCCT GTCGGTAAAG ACATTCTGAA AGGTATGTCT
GACGCTGTTT CTAGCGTTAT CGGTTTTGCA CAAAACGGTA TCGGCTTCCT GTTTGGTGAT
TTAGCTAACT TCAAACTTGG CTTTATCTTC GCTGTAAACG TGTTACCAGT TATCGTGTTC
TTCTCTTCTC TGATCGCCGT TCTGTACTAC TTAGGCGTCA TGCAGTGGAT CATCCGTATC
ATCGGTGGTG GTCTGCAAAA AGCATTAGGC ACAAGCCGTA CTGAATCTAT GTCTGCGACT
GCTAACATCT TCGTTGGTCA AACTGAAGCG CCGTTAGTAG TTCGGCCATT CATTCCTACT
ATGACTCAAT CAGAACTGTT TGCGGTCATG GTCGGTGGTT TAGCTTCTAT TGCAGGTTCT
GTACTTGCTG GTTACGCGCA AATGGGCGTG CCTATTGAGT TCTTAGTTGC TGCATCGTTC
ATGGCGGCAC CAGGTGGTCT ATTAATGGCT AAGCTGATGC ACCCAGAAAC TGAAGTTGCT
AAAAACGATA TGGATGAGTT ACCAGAAGAT CCTGATAAAC CAGCTAACGT ATTAGATGCT
GCTGCTGCGG GTGCTTCATC AGGTATGCAC TTAGCCTTAA ACGTGGGTGC AATGTTGTTA
GCCTTCGTCG GTTTGATCGC GATGATCAAC GGTATCATCG GTGGTGTAGG TGGTTGGTTT
GGTGTTGAAG GTTTAACACT GGAACTGATC CTTGGCTATG TGTTTATGCC TTTAGCATTC
CTTATCGGTG TGCCTTGGAA CGAAGCGTTA GTCGCAGGTT CTTTCATTGG TCAAAAGATC
ATTGTTAACG AATTTGTAGC CTACTTAAAC TTCGCGCCTT ACATCTCTGA GGCTGCAACC
GCTTGTACAT CAGTTGCTGC TGAAGTGGTT AAAGGAAGCT TACCGTTATG TGTTGCTGAG
ACTCAAGCTG TGATGACATC TAGAACGCAA GCGATTGTTT CGTTTGCACT GTGTGGATTC
GCGAACTTGT CTTCTATCGC AATTCTGCTC GGTGGTTTAG GTGCAATGGC ACCAAACCGT
CGCCATGATT TAGCTAAGAT GGGGATTCGT GCGGTTATCG CTGGCTCTCT TGCTAACTTA
ATGAGTGCAA CTATTGCGGG TCTGTTCTTA GCTATCTAA
 
Protein sequence
MNILMSLVGV VVLLAIGFLL SNNKKAINLR TVGGALAIQA AFGGFVLYVP VGKDILKGMS 
DAVSSVIGFA QNGIGFLFGD LANFKLGFIF AVNVLPVIVF FSSLIAVLYY LGVMQWIIRI
IGGGLQKALG TSRTESMSAT ANIFVGQTEA PLVVRPFIPT MTQSELFAVM VGGLASIAGS
VLAGYAQMGV PIEFLVAASF MAAPGGLLMA KLMHPETEVA KNDMDELPED PDKPANVLDA
AAAGASSGMH LALNVGAMLL AFVGLIAMIN GIIGGVGGWF GVEGLTLELI LGYVFMPLAF
LIGVPWNEAL VAGSFIGQKI IVNEFVAYLN FAPYISEAAT ACTSVAAEVV KGSLPLCVAE
TQAVMTSRTQ AIVSFALCGF ANLSSIAILL GGLGAMAPNR RHDLAKMGIR AVIAGSLANL
MSATIAGLFL AI