Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SO_1214 |
Symbol | |
ID | 1169042 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella oneidensis MR-1 |
Kingdom | Bacteria |
Replicon accession | NC_004347 |
Strand | + |
Start bp | 1260899 |
End bp | 1262197 |
Gene Length | 1299 bp |
Protein Length | 432 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 637343167 |
Product | NupC family protein |
Protein accession | NP_716837 |
Protein GI | 24372795 |
COG category | [F] Nucleotide transport and metabolism |
COG ID | [COG1972] Nucleoside permease |
TIGRFAM ID | [TIGR00804] nucleoside transporter |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAATATAT TGATGAGCTT AGTAGGGGTG GTCGTCCTAC TTGCGATAGG TTTCCTCCTA TCGAATAACA AAAAAGCAAT TAATTTACGT ACAGTGGGTG GAGCATTAGC CATCCAGGCT GCCTTCGGTG GTTTTGTACT GTACGTTCCT GTCGGTAAAG ACATTCTGAA AGGTATGTCT GACGCTGTTT CTAGCGTTAT CGGTTTTGCA CAAAACGGTA TCGGCTTCCT GTTTGGTGAT TTAGCTAACT TCAAACTTGG CTTTATCTTC GCTGTAAACG TGTTACCAGT TATCGTGTTC TTCTCTTCTC TGATCGCCGT TCTGTACTAC TTAGGCGTCA TGCAGTGGAT CATCCGTATC ATCGGTGGTG GTCTGCAAAA AGCATTAGGC ACAAGCCGTA CTGAATCTAT GTCTGCGACT GCTAACATCT TCGTTGGTCA AACTGAAGCG CCGTTAGTAG TTCGGCCATT CATTCCTACT ATGACTCAAT CAGAACTGTT TGCGGTCATG GTCGGTGGTT TAGCTTCTAT TGCAGGTTCT GTACTTGCTG GTTACGCGCA AATGGGCGTG CCTATTGAGT TCTTAGTTGC TGCATCGTTC ATGGCGGCAC CAGGTGGTCT ATTAATGGCT AAGCTGATGC ACCCAGAAAC TGAAGTTGCT AAAAACGATA TGGATGAGTT ACCAGAAGAT CCTGATAAAC CAGCTAACGT ATTAGATGCT GCTGCTGCGG GTGCTTCATC AGGTATGCAC TTAGCCTTAA ACGTGGGTGC AATGTTGTTA GCCTTCGTCG GTTTGATCGC GATGATCAAC GGTATCATCG GTGGTGTAGG TGGTTGGTTT GGTGTTGAAG GTTTAACACT GGAACTGATC CTTGGCTATG TGTTTATGCC TTTAGCATTC CTTATCGGTG TGCCTTGGAA CGAAGCGTTA GTCGCAGGTT CTTTCATTGG TCAAAAGATC ATTGTTAACG AATTTGTAGC CTACTTAAAC TTCGCGCCTT ACATCTCTGA GGCTGCAACC GCTTGTACAT CAGTTGCTGC TGAAGTGGTT AAAGGAAGCT TACCGTTATG TGTTGCTGAG ACTCAAGCTG TGATGACATC TAGAACGCAA GCGATTGTTT CGTTTGCACT GTGTGGATTC GCGAACTTGT CTTCTATCGC AATTCTGCTC GGTGGTTTAG GTGCAATGGC ACCAAACCGT CGCCATGATT TAGCTAAGAT GGGGATTCGT GCGGTTATCG CTGGCTCTCT TGCTAACTTA ATGAGTGCAA CTATTGCGGG TCTGTTCTTA GCTATCTAA
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Protein sequence | MNILMSLVGV VVLLAIGFLL SNNKKAINLR TVGGALAIQA AFGGFVLYVP VGKDILKGMS DAVSSVIGFA QNGIGFLFGD LANFKLGFIF AVNVLPVIVF FSSLIAVLYY LGVMQWIIRI IGGGLQKALG TSRTESMSAT ANIFVGQTEA PLVVRPFIPT MTQSELFAVM VGGLASIAGS VLAGYAQMGV PIEFLVAASF MAAPGGLLMA KLMHPETEVA KNDMDELPED PDKPANVLDA AAAGASSGMH LALNVGAMLL AFVGLIAMIN GIIGGVGGWF GVEGLTLELI LGYVFMPLAF LIGVPWNEAL VAGSFIGQKI IVNEFVAYLN FAPYISEAAT ACTSVAAEVV KGSLPLCVAE TQAVMTSRTQ AIVSFALCGF ANLSSIAILL GGLGAMAPNR RHDLAKMGIR AVIAGSLANL MSATIAGLFL AI
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