| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_1208 |
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| Symbol | |
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| ID | 1169036 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella oneidensis MR-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004347 |
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| Strand | - |
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| Start bp | 1252572 |
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| End bp | 1254626 |
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| Gene Length | 2055 bp |
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| Protein Length | 684 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 637343162 |
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| Product | GGDEF domain-containing protein |
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| Protein accession | NP_716832 |
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| Protein GI | 24372790 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACGGGTC GCTTTAAATC CCTAACTTGG AAACAGACTA ACCTCGTCGT TTTTACTGCG
TTATTTTTTG CCATCGCTAT TTTTATTGTT GAAATTGCCC TTGTCGTTGT ATCCACTAAA
CAGCAACTCA CTACAACTCA ACAGGAATTA CTCGATTCTG TCGAACAACC CGCTGCAAAT
GCTGTTTGGG CATTGGATGA TAATCTCGCC AGGCAAACCC TAGAAGGCGC CATAAAAGTT
GAACATGTAG GCTCTGCGGT AATAGAGCTT GATGACGGGT CAATGTTCGT GTCAGTAAGT
AATAATCGGG CAAACAACTC GCAAACCTTC ATTAGTCTCA GCAATCAACT GTTTGATGAT
CTGAAAGAAA TTTCTCGCCC TCTCTACCGG CCATTTTACT TTGAAGGTAC GCAAAAACAG
CAGCTTATCG GCACATTAAC CATTTTTTAC GACACTCAAG AACTGACCAA CACACTCTTT
AGTCAGCTCA GATTTAGCTT TTTTGCCACG TTAGCCCGCG CACTTTTGCT CACCTTAGTA
TTAACGGTTG TGTTTCACCG CTTTTTAACT CAGCCAATAG CGAGGATCAG TGAAGCGATA
GATAAAATCG AGCCCGATTC GCCCGATGAA AATCTACTCC CCATGTCCAA TGCCCATAAG
GATGATGAAT TGGGATTAGT GACGTCAAAA TTTAATCAGA TCTTAATTCA GTTCAGCCAG
ACGCAGTCCA AACTTCGTAA AATGGCAACC CGAGACCCAC TCACAGGATT GCCTAATCGC
ACTTTACTGC TCGAAACGAT TGCCGTGACT ATCCAACGCT CGCGGGTTCA CAAGCGTAGC
TTTGCCTTGA TGTTTATCGA TTTAGATCGT TTTAAGAATA TCAATGACTC CCTAGGACAT
GCACTAGGCG ATCAATTTCT CGCACGTATT GCCCGCATTC TAGAGCGCGT CGTGGGCGAC
AAAGGCTCTG TTTCACGCTT AGGTGGTGAT GAATTCGTTA TTTTAGCAGA CTCTGTACAT
TCCCCAGACC AAGCGGCGGA CTTTGTCGAT AAACTCTTAG TGCAACTCAA TGTGCCCATC
CAATTGAATG AACACGCGAT TCACCCCGCT GCATCTATTG GGATTTCTAT CTATCCAGAG
GATGGAAGTA GCGCTGAAGA TCTTATCCGC CATGCCGACA TCGCGATGTA CAGCGCAAAA
GCGGCGGGCT CGAATCAATG GGCTTTCTTC AAACAGCAAA TGACCGAACG GGCAGCAGTC
AGGCTTCGTA CTGAAGCATC ACTGCATGAT GCATTAAAAA ATAACGAGTT CTTGCTGTAT
TTCCAGCCTA AATTAGACCT ACAAACAGGC AAAATAACCG GTTGTGAAGC CTTAATTCGT
TGGCAAAAAG ACGGCCGATT GATTAGCCCC ATGTCTTTTA TTCCGGTGGC AGAAGAGACG
GGGATTATCA TTCCGATTGG TCGCTGGGTG ATAGAGCAAA GTTGCCGAGT GCTGCGGGAA
TGGCAGAAAA AATATAACTA TGCCATTCCT ATCGCGATTA ACGTCGCGTC ACAACAGTTT
GCCGATGCAA GCCTGGTATC AGATATCAAA CAAATGGCGC TGCGTTATCA AATTCAACCA
GAGTTATTAG AAATTGAGAT TACTGAAACC TCGTTAATGA ATGATATTGA ACTTGCTATC
AACAAATTAG AGCAACTCAA ATCGGCAGGA TTTGGTATTG CAGTCGATGA TTTTGGTACA
GGTTATTCTT CCCTTTCTTA CCTTCGCCAT CTGCCAATCA CAACCATGAA AATCGATCGC
TGCTTCGTTT CCGATCTTCC TGGAGACAGC GCAATCGCAT CAACAATTTT GATGTTAGGT
AAACAATTAA ATCTGACTAT CGTGGCAGAA GGAATTGAAA ACGAGCTGCA ACTGGATTGG
CTTAAGAGTA ATGAGTGCCA GATAGGACAA GGCTTTTATT TTAGCCAGCC TTTGCCACAA
GCTGACTTTG AGGCGCTCTA TATGGCCAGT CAAACAGCGA CTATCAGCAA TTTGGATGGG
CTACGCGGGA CTTAG
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| Protein sequence | MTGRFKSLTW KQTNLVVFTA LFFAIAIFIV EIALVVVSTK QQLTTTQQEL LDSVEQPAAN
AVWALDDNLA RQTLEGAIKV EHVGSAVIEL DDGSMFVSVS NNRANNSQTF ISLSNQLFDD
LKEISRPLYR PFYFEGTQKQ QLIGTLTIFY DTQELTNTLF SQLRFSFFAT LARALLLTLV
LTVVFHRFLT QPIARISEAI DKIEPDSPDE NLLPMSNAHK DDELGLVTSK FNQILIQFSQ
TQSKLRKMAT RDPLTGLPNR TLLLETIAVT IQRSRVHKRS FALMFIDLDR FKNINDSLGH
ALGDQFLARI ARILERVVGD KGSVSRLGGD EFVILADSVH SPDQAADFVD KLLVQLNVPI
QLNEHAIHPA ASIGISIYPE DGSSAEDLIR HADIAMYSAK AAGSNQWAFF KQQMTERAAV
RLRTEASLHD ALKNNEFLLY FQPKLDLQTG KITGCEALIR WQKDGRLISP MSFIPVAEET
GIIIPIGRWV IEQSCRVLRE WQKKYNYAIP IAINVASQQF ADASLVSDIK QMALRYQIQP
ELLEIEITET SLMNDIELAI NKLEQLKSAG FGIAVDDFGT GYSSLSYLRH LPITTMKIDR
CFVSDLPGDS AIASTILMLG KQLNLTIVAE GIENELQLDW LKSNECQIGQ GFYFSQPLPQ
ADFEALYMAS QTATISNLDG LRGT
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