Gene SO_1196 details

Gene Information

• Locus tag: SO_1196
• Symbol: rrmJ
• ID: 1169024
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella oneidensis MR-1
• Kingdom: Bacteria
• Replicon accession: NC_004347
• Strand: +
• Start bp: 1239182
• End bp: 1239811
• Gene Length: 630 bp
• Protein Length: 209 aa
• Translation table: 11
• GC content: 50%
• IMG OID: 637343149
• Product: 23S rRNA methyltransferase J
• Protein accession: NP_716821
• Protein GI: 24372779
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0293] 23S rRNA methylase
• TIGRFAM ID: [TIGR00438] cell division protein FtsJ

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTCAGGTA AAAAACGTAC GGCCAGTTCC AATCGCTGGA TGCTGGAACA CTTTGATGAT 
CATTATGTCA AACTAGCACA GAAACGGGGA TTGCGTTCTC GCGCTGCGTT TAAGCTTGAA 
GAACTACAGC AAAAGGATCA GTTGATCCGC CCAGGTATGA CGGTTGTTGA CCTAGGGGCT 
GCTCCTGGTG GGTGGTCTCA GGTAGCCGTT AAGCTAGTCG GAGACAAAGG TAAAGTCATC 
GCCTGTGATA TTTTACCGAT GGATCCCATC GTCGGCGTGG ATTTCTTGCA AGGGGACTTT 
CGTGAAGAGA AAGTGCTTGA AGCATTGCTA ACTCGCGTCG GTGCAGATAA GGTTGACGTT 
GTATTGTCTG ATATGGCGCC CAACATGAGT GGTTCAGACG GTGTCGATCA GCCGCGCGCC 
ATGTATTTAG TCGAGTTGGC GTTAGATATG TGTCATCAAG TATTGGCACC TAACGGCAGT 
TTTGCGGTCA AAGTCTTTCA GGGGGAGGGG TTTGACGAAT ATATGAAGGC GGTTAAAGAG 
GCATTCAAAG TCGTAAAAAC ACGTAAACCG GACTCGTCGC GGGCACGCTC CCGTGAGGTC 
TATCTTGTGG CGACAGGGTA CAAGTTGTAG 

 

Protein sequence

MSGKKRTASS NRWMLEHFDD HYVKLAQKRG LRSRAAFKLE ELQQKDQLIR PGMTVVDLGA 
APGGWSQVAV KLVGDKGKVI ACDILPMDPI VGVDFLQGDF REEKVLEALL TRVGADKVDV 
VLSDMAPNMS GSDGVDQPRA MYLVELALDM CHQVLAPNGS FAVKVFQGEG FDEYMKAVKE 
AFKVVKTRKP DSSRARSREV YLVATGYKL