Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SO_1181 |
Symbol | miaB |
ID | 1169010 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella oneidensis MR-1 |
Kingdom | Bacteria |
Replicon accession | NC_004347 |
Strand | - |
Start bp | 1223880 |
End bp | 1225304 |
Gene Length | 1425 bp |
Protein Length | 474 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 637343128 |
Product | (dimethylallyl)adenosine tRNA methylthiotransferase |
Protein accession | NP_716806 |
Protein GI | 24372764 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0621] 2-methylthioadenine synthetase |
TIGRFAM ID | [TIGR00089] RNA modification enzyme, MiaB family [TIGR01574] tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGCAAAA AACTCCATAT TAAAACTTGG GGCTGTCAAA TGAATGAGTA CGACTCATCC AAGATGGCGG ATCTGTTAGG CGAATACCAA GGTTACACCT TAACTGAAGA AGCAGAAGAA GCAGACATTT TGCTGCTAAA CACTTGTTCT ATCCGTGAAA AGGCACAGGA AAAAGTGTTC CATCAGTTAG GCCGCTGGAA GACACTCAAA GATAAAAATC CCGACCTGAT TATTGGTGTG GGTGGTTGTG TTGCATCCCA AGAAGGCAAA GCGATTAAAG ACCGAGCTCA ATGTGTCGAC ATCATTTTTG GCCCACAGAC ACTTCACCGC CTGCCGGAGA TGATCGAACA AGTGCGTCGT GGCGAAAAAG CCGTGATCGA CGTGAGTTTC CCTGAGATCG AAAAATTTGA CCGTCTTCCC GAACCGCGCG CCGAAGGCCC AACGGCGTTT GTGTCAATCA TGGAAGGTTG TAGCAAATAC TGTTCGTTCT GCGTAGTGCC TTACACCCGT GGCGAAGAAG TCAGCCGTCC ATCGGATGAC ATCATCCTCG AAATTGCCCA ACTGGCAGAA CAAGGTGTGC GCGAAGTTAA CCTGCTCGGT CAAAACGTTA ATGCTTACCG TGGTGCAACC CACGATGGCG GTATCTGTAC CTTCGCCGAG CTATTACGCT ATGTTGCCGC TATTGATGGC ATTGATCGCA TTCGCTTCAC CACCAGTCAT CCAATTGAAT TTACACAGGA TATCATCGAC GTTTACGAAG ATACTCCTGA ATTAGTGAGT TTCTTGCACT TACCTGTGCA GTCAGGTTCT GACCGAATTC TCACGGCGAT GAAACGCGGC CATATGGCGA TTGAATACAA ATCTATCATC CGCCGTCTGC GTAAAGCTCG TCCAGATATC CAAATCAGCT CTGACTTTAT CATTGGCTTC CCTGGTGAAA CCCAAGAAGA CTTCGCTGAT ACCATGAAGC TGATTGAAGA TGTAGCATTC GACCACAGTT TCAGCTTCAT CTATAGCGCA CGCCCAGGCA CACCTGCGGC AGACTTACCT GACGACGTTG ATATGGAAGA GAAAAAACAA CGTCTGGCGA TTCTGCAAGA CCGCATCACT CAGCAAGCCA TGCGTTACAG CCGCCATATG ATGGGCACAG TGCAACGCAT TTTGGTTGAA GGCCCGTCGG TAAAAAACCC GATGGAACTG CGTGGTCGCA CCGAAAACAA CCGTGTGGTG AACTTTGAAG GCTTACCAAA GCACATTGGA ACCTTTGTGG ATGTTGAAAT TGTCGACGTT TACACTAACT CACTACGCGG TAAATTTATC CGCGGTGAAG ATGAAATGGA TCTGCGCCGT AACCTGCGCC CATCGGATAT TCTGGCGAAG CATAAGCAAG ATGATGATCT TGGTGTAACT CAATTTAAAC CTTAG
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Protein sequence | MSKKLHIKTW GCQMNEYDSS KMADLLGEYQ GYTLTEEAEE ADILLLNTCS IREKAQEKVF HQLGRWKTLK DKNPDLIIGV GGCVASQEGK AIKDRAQCVD IIFGPQTLHR LPEMIEQVRR GEKAVIDVSF PEIEKFDRLP EPRAEGPTAF VSIMEGCSKY CSFCVVPYTR GEEVSRPSDD IILEIAQLAE QGVREVNLLG QNVNAYRGAT HDGGICTFAE LLRYVAAIDG IDRIRFTTSH PIEFTQDIID VYEDTPELVS FLHLPVQSGS DRILTAMKRG HMAIEYKSII RRLRKARPDI QISSDFIIGF PGETQEDFAD TMKLIEDVAF DHSFSFIYSA RPGTPAADLP DDVDMEEKKQ RLAILQDRIT QQAMRYSRHM MGTVQRILVE GPSVKNPMEL RGRTENNRVV NFEGLPKHIG TFVDVEIVDV YTNSLRGKFI RGEDEMDLRR NLRPSDILAK HKQDDDLGVT QFKP
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