Gene SO_1179 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSO_1179 
Symbol 
ID1169008 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella oneidensis MR-1 
KingdomBacteria 
Replicon accessionNC_004347 
Strand- 
Start bp1222095 
End bp1222556 
Gene Length462 bp 
Protein Length153 aa 
Translation table11 
GC content46% 
IMG OID637343126 
Productputative metalloprotease 
Protein accessionNP_716804 
Protein GI24372762 
COG category[R] General function prediction only 
COG ID[COG0319] Predicted metal-dependent hydrolase 
TIGRFAM ID[TIGR00043] metalloprotein, YbeY/UPF0054 family 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGTCTTG ATTTAGCCTT AGATGTGCAA TACGCCACGA CGAGTGACTA TCTGCCCAGC 
GAAGAGCAGT TAGCTCTCTG GGTAAAAACC GCCATTGGCA ACAGTATGAA GCAAGCGGAA 
CTAACGATTC GTATCGTCGA TGCGCGTGAA AGCCAAATGC TTAATGGCAC CTACAGGGGC 
AAAGATAAAC CCACCAATGT GTTGTCGTTT CCCTTTGAAG CGCCGCCAGA AATTGAACTT 
CCACTGCTCG GAGATCTTGT CATTTGTGCC TCAGTCGTTG AAAATGAAGC GCGTGAACAA 
GATAAAACCC TAGAAGCCCA TTGGGCACAC ATGGTTGTAC ATGGTTGCTT GCATCTGCTA 
GGTTATGATC ACATTGAAGA CGAAGAAGCC GAAGAGATGG AGTCATTAGA GACTCAACTC 
ATTGAAAGCT TAGGTTTTAC TGACCCATAT AAGGAACAAT AA
 
Protein sequence
MSLDLALDVQ YATTSDYLPS EEQLALWVKT AIGNSMKQAE LTIRIVDARE SQMLNGTYRG 
KDKPTNVLSF PFEAPPEIEL PLLGDLVICA SVVENEAREQ DKTLEAHWAH MVVHGCLHLL 
GYDHIEDEEA EEMESLETQL IESLGFTDPY KEQ