Gene SO_1176 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSO_1176 
Symbol 
ID1169005 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella oneidensis MR-1 
KingdomBacteria 
Replicon accessionNC_004347 
Strand- 
Start bp1219078 
End bp1219569 
Gene Length492 bp 
Protein Length163 aa 
Translation table11 
GC content43% 
IMG OID637343123 
Producthypothetical protein 
Protein accessionNP_716801 
Protein GI24372759 
COG category[N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG4970] Tfp pilus assembly protein FimT 
TIGRFAM ID[TIGR02532] prepilin-type N-terminal cleavage/methylation domain 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAATAACA AACAGACTCA AGGTTTTACC TTAATCGAAC TCGTGGTAGT TATCATCGTG 
CTGGGAATTT TAGCCGTTAT CGCGGCACCT AAATTTATCG GTATGAGTAA AGAGGCTCGG 
GAAAAAAGTC TGCAGCAACT CCAAGCCAGT GTAAAAACAG CCAATACCTT AGCCTATTCC 
AAAACCCAAA TGCCCAGCTT ACAGAGCCAA GCTGTCGCTG GGCGAGATGA TATTATTGAC 
GTCGACCTCG ATGGTGATAA TGTGGCCGAA ACCCGCCTCA AATGGGGTTA TTTAGATAAT 
ACCGATATCG AAAAATGGAT CGCCAAAGAC GATAAACTTA AGATCCAGTA TCAAGGGATT 
GATATTACGT ATATTGGCTA CGATTTGAAT GGCAATACCC TAGTCAACGA TGACCAATGT 
TATTTTCGCT ATACCCAAGC ATCGGACGCG AATACACCAC CACGTTACGA TATCAATGCT 
CAAGGTTGTT GA
 
Protein sequence
MNNKQTQGFT LIELVVVIIV LGILAVIAAP KFIGMSKEAR EKSLQQLQAS VKTANTLAYS 
KTQMPSLQSQ AVAGRDDIID VDLDGDNVAE TRLKWGYLDN TDIEKWIAKD DKLKIQYQGI 
DITYIGYDLN GNTLVNDDQC YFRYTQASDA NTPPRYDINA QGC