Gene SO_1166 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSO_1166 
Symbol 
ID1168995 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella oneidensis MR-1 
KingdomBacteria 
Replicon accessionNC_004347 
Strand- 
Start bp1208522 
End bp1209586 
Gene Length1065 bp 
Protein Length354 aa 
Translation table11 
GC content44% 
IMG OID637343113 
Productmembrane-bound lytic transglycosylase, putative 
Protein accessionNP_716791 
Protein GI24372749 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG2951] Membrane-bound lytic murein transglycosylase B 
TIGRFAM ID[TIGR02282] lytic murein transglycosylase B 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCCTATTC TCCGAGCTTA TTTAGCTCCA TTGGCAGTGC TTTGCCTCAG TTCATACCTT 
ATTGGCTGTT CAACGGCTAA CGATCCCGTT AACACTACGC AGCCAATAAG TGTCGCCGTG 
ACAACGCCAG CACCAACGCC CGTGTTACCC GAAGCCTTAA AGGCTGAGTT TATTAAAACG 
CAAATGGCAC AAGGCTTTAC GAAGGCAGAA GTCGAAACCT TTCTTGCCAA AGCCAAATAC 
AATCAAGCGG TAATTGATGC GATTTCTCGC CCTTGGGAAG CCAAACCTTG GCATAAGTAT 
TACCCGATTT TCTTAACCGA AAAACGTCTC GACGCGGGGC TGGCCTTCTG GAAAAAACAC 
GAAAAAGCAA TCGCTAAAGC CGCGTCAAAT TACCAAGTTG AGCCGCAAAT TATTGTCGCC 
ATTATCGGTA TTGAAACTTT TTATGGGCAA TACACAGGTA ATTACCCAGT TATTGATGCA 
CTCTATACCT TAGGGTTTTA TTACGAGCCG AGAGCCACCT TTTTCCGCAA GGAATTTGGC 
GAGTTAATGA AACTGGTTAA AGAGGAACAT TTAGATATCG ATAGCCTCAA AGGCTCCTAC 
GCTGGCGCAA TGGGTTTCGG GCAGTTTATT CCTTCAAGCT ACCGCCACTA TGCCGTAGAT 
TTTGATGGCA GCGGTAATCG TGATTTACTC AAAAGCCCTG ATGATGCCAT TGGCAGTGTT 
GCCAATTACT TCCATGAACA TGGTTGGCAA TTGAATGCAC CGGTAGCCTT ACCTTTAGTC 
AATCGCAGTG CCAATGCACC TAAGGCTAAA GTGTGGGCAG GTGAAAAGTT GCATTACAAG 
GTCTCAGATA TCCTCTCACC GACTTTATCA CTGACCAATG CTAGAGATGT GGATGCCTCA 
CAAAAAGCCA TGCTTATCGA ACTTGAACAA GTGGGTAGCA AAGATTACTG GCTAGGGTTA 
AATAACTTTT ATGTGATCAC CCGTTACAAT CGTAGTCCTT TGTATTCAAT GGCTGTATAT 
CAATTTAGCC AACAACTGAA GCAACAACAT GACGCTAAAA AATAA
 
Protein sequence
MPILRAYLAP LAVLCLSSYL IGCSTANDPV NTTQPISVAV TTPAPTPVLP EALKAEFIKT 
QMAQGFTKAE VETFLAKAKY NQAVIDAISR PWEAKPWHKY YPIFLTEKRL DAGLAFWKKH 
EKAIAKAASN YQVEPQIIVA IIGIETFYGQ YTGNYPVIDA LYTLGFYYEP RATFFRKEFG 
ELMKLVKEEH LDIDSLKGSY AGAMGFGQFI PSSYRHYAVD FDGSGNRDLL KSPDDAIGSV 
ANYFHEHGWQ LNAPVALPLV NRSANAPKAK VWAGEKLHYK VSDILSPTLS LTNARDVDAS 
QKAMLIELEQ VGSKDYWLGL NNFYVITRYN RSPLYSMAVY QFSQQLKQQH DAKK