Gene SO_1150 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSO_1150 
SymbolrpiA 
ID1168979 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella oneidensis MR-1 
KingdomBacteria 
Replicon accessionNC_004347 
Strand- 
Start bp1194143 
End bp1194802 
Gene Length660 bp 
Protein Length219 aa 
Translation table11 
GC content47% 
IMG OID637343096 
Productribose-5-phosphate isomerase A 
Protein accessionNP_716775 
Protein GI24372733 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0120] Ribose 5-phosphate isomerase 
TIGRFAM ID[TIGR00021] ribose 5-phosphate isomerase 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACTCAAG ATGAAATGAA AAAAGCTGCG GGCTGGGCTG CACTCAAATA CGTTGAGAAG 
GACAGCATTG TGGGTGTGGG CACAGGCTCA ACCGTTAACC ACTTTATCGA TGCTTTGGCG 
ACCATGAAGG CTGATATTGA AGGCGCAGTA TCAAGCTCTG AAGCTTCAAC GCAAAAAATG 
AAGGCCCTTG GCATCCCGGT TTATGACTTA AACAGCGTCG ATAAATTATC TGTCTATGTC 
GATGGTGCCG ATGAAATCAA CGGCCACATG GACATGATCA AAGGTGGTGG CGCGGCATTA 
ACCCGCGAAA AAATCGTTGC AGCTGTGGCT GAAAAGTTTG TCTGTATCGT GGATAACACT 
AAGCAAGTAG ATATCTTGGG TGAATTTCCA CTGCCCGTTG AAGTGATCCC GATGGCGCGC 
TCTTACGTGG CTCGCCAACT GGTAAAACTG GGTGGTGATC CTGTTTACCG CGAAGGCGTT 
ATCACTGATA ACGGTAATGT GATCCTCGAT GTTTACAATC TTAAGATCCT CAATCCGAAA 
GAATTAGAAG ATAAGATCAA TGCCATTGTG GGTGTGGTCA CTAATGGTCT GTTCGCAAAA 
CGCGGCGCCG ATGTGTTACT GGTTGGTACC CCTGAAGGCG TTAAAACCTT TACCGCTTGA
 
Protein sequence
MTQDEMKKAA GWAALKYVEK DSIVGVGTGS TVNHFIDALA TMKADIEGAV SSSEASTQKM 
KALGIPVYDL NSVDKLSVYV DGADEINGHM DMIKGGGAAL TREKIVAAVA EKFVCIVDNT 
KQVDILGEFP LPVEVIPMAR SYVARQLVKL GGDPVYREGV ITDNGNVILD VYNLKILNPK 
ELEDKINAIV GVVTNGLFAK RGADVLLVGT PEGVKTFTA