| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_1100 |
|---|
| Symbol | |
|---|
| ID | 1168933 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella oneidensis MR-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004347 |
|---|
| Strand | + |
|---|
| Start bp | 1141864 |
|---|
| End bp | 1142976 |
|---|
| Gene Length | 1113 bp |
|---|
| Protein Length | 370 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 637343051 |
|---|
| Product | extracellular solute-binding protein |
|---|
| Protein accession | NP_716726 |
|---|
| Protein GI | 24372684 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG4663] TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGTTATT TGGGGGGACT GTTATTTACG GTATTGTTTT TTGGTGCGAC TGGCTGTAAT
CCCTCATCCC AACATGCTGA ACCTATTTCT AAAGCGTCCA TTACTGATGC ACCTCCCGTG
AAGCAAGTGA TTGAATGGCG TTTAGCCACC TCTTGGCCGA AAAATTTCCC CGGCTTAGGT
ATGGCGCCAG AGCGTTTTGC AACGCTGGTT AATGATATGT CCCATGGTCA ATTGCGCATT
ACCGTGCACG GCGCTGGGGA ATTAATGCCT GCCTTTGCGG TATTCGACGG GGTTAGCCAA
GGTAAAATTC AGATGGCCCA CGCCGCTTCC TATTATTGGA AGGGCAAAAC TCCCGCCTCA
CAGTTTTTTT CTTCGATTCC ATTTGGAATG ACAGCACAGG AAATGAACGG CTGGTTGCAT
TATGGCGGCA TGGCGCTGTG GGAGGAGGTT TATCGCCCCT TTGGTATTAT TCCCTTAGCA
GGGGGAAATA CAGGCATGCA AATGGGCGGC TGGTTTAATA AACCCATCAA TACGATTGCC
GACTTTAAAG GGCTGAAGAT CCGAATGCCA GGGCTTGGTG GAGAGGTACT TAAGCGTGTT
GGCGCCGTGC CTGTTAATAT GGCTGGCAGA GAACTGTTTA GTGCGCTACA AACAGGCTCG
CTTGACGCCG CCGAATGGGT TGGGCCAGTT AACGATCTCG CCTTTGGTTT GCATAAAGTC
GCGAAATATT ATTACTATCC CGGTTGGCAT GAACCTGGTT CCAATATGGA ATTTTTGATC
AACAAAGCCG CCTTTGAGAG TCTTCCCGAA GATTTGCAAA CTGTCGTTAA AACAGCGGCC
CGTGCTATCA ATCAAGATAT GTTGGATGAA TACACCACGA GCAATGTCAC CGCCCTCGAA
ACCCTCGTTA AAGAAGAAGG TGTCGAGCTT AGGGCTTTTC CGCCTGCGGT GTTAACCGAA
CTTGAGCGGA TCTCACATCA GGTGATTGGA GAACAAGCGG AACAAGATCC TATGATGGGC
AAGGTGTACC GTGCTTATCA TGCTTATGAA CAGGGAGTGC GTGAATACCA TAAGATTTCT
GAGGACGCAT ACAGCCAGCA ACGGCAGCAT TAA
|
|---|
| Protein sequence | MRYLGGLLFT VLFFGATGCN PSSQHAEPIS KASITDAPPV KQVIEWRLAT SWPKNFPGLG
MAPERFATLV NDMSHGQLRI TVHGAGELMP AFAVFDGVSQ GKIQMAHAAS YYWKGKTPAS
QFFSSIPFGM TAQEMNGWLH YGGMALWEEV YRPFGIIPLA GGNTGMQMGG WFNKPINTIA
DFKGLKIRMP GLGGEVLKRV GAVPVNMAGR ELFSALQTGS LDAAEWVGPV NDLAFGLHKV
AKYYYYPGWH EPGSNMEFLI NKAAFESLPE DLQTVVKTAA RAINQDMLDE YTTSNVTALE
TLVKEEGVEL RAFPPAVLTE LERISHQVIG EQAEQDPMMG KVYRAYHAYE QGVREYHKIS
EDAYSQQRQH
|
|---|
| |