| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_0980 |
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| Symbol | rumB |
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| ID | 1168823 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella oneidensis MR-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004347 |
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| Strand | + |
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| Start bp | 1009614 |
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| End bp | 1010762 |
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| Gene Length | 1149 bp |
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| Protein Length | 382 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 637342944 |
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| Product | 23S rRNA methyluridine methyltransferase |
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| Protein accession | NP_716609 |
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| Protein GI | 24372567 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG2265] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase |
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| TIGRFAM ID | [TIGR02085] 23S rRNA (uracil-5-)-methyltransferase RumB |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGCAATGTG GGTATTTTGA ACGAGGCCAA TGCCAATCCT GTCGCCATAT TAAGCTCCCG
ATGGTGCAGC AATTGGCGGC GAAAACCCAA GAATTGCAAC AATTGTTAGC CCCTTTTGTT
GTGAGCACTA ATACCCAATT TTTGCCACCC GTAGTGGGTG AGGACAGCGG CTTTCGTAAC
AAGGCGAAAA TGGTGGTGCT TGGCGCTGCC CATGCGCCTG TGCTGGGGAT TGTCAGTCCA
AATGGCGAAG CGGTTAGTCT CTGTGACTGC TTGCTGTACC CTGCAGATAT GCAAGCGTTG
CTCTATCGCC TAGAGCGTTT TGTGCAGCAA GCGGGTATCC CGCCTTATCG CATTGATAAA
GCCAAGGGCG AGCTTAAGTA TATTCTGCTG ACCCGAAGCC AAGTTCGTGG TGAATATATG
CTGCGTTTTG TGCTGCGATC ACCCGATGCC ATCGCTCGTA TCGAACGGGA ATTACCCGCG
CTGATGGCTG AATATCCACA AATCAACGTC GTGTCGGTAA ATATTCAGCC CATTCATATG
GCGATCCTTG AGGGGGATGA GGAAATTTTC TTAACTGAAA ATACTCGTCT CGAAGAGCGC
TTTAACGATG TGCCTTTGTT TATTCGTCCA AAAAGCTTTT TCCAAACTAA TCCACACGTT
GCTGCAAAGC TGTATCAAAC CGCCCGTGAG TGGGTTGGCG AATTTGCACC AAAGTCACTG
TGGGATTTAT TTTGTGGTGT GGGCGGCTTT GGCTTGCACT GCGCCTCTAA AGATATTCCG
CTAACAGGCA TTGAAATCGA GGCTGAAGCG ATTGCGTGCG CTAAGATGTC AGCGCAAATG
ATGGGGCTCG ATAACGTGCA GTTTATGGCG CTCGACTCTA CCGATTTTGC CAAAGGTGAT
GCGGCCGCAA CCAAGCCTGA TTTAATTATT GTCAATCCGC CGCGCCGCGG GATTGGTGAG
TCCCTATGTG ATGCTTTAAG TGAATTTGCC CCTAGGGCGA TTTTGTATTC TAGTTGTAAT
CCTAAAACGC TGGCGAAGGA TTTAGTTCAT ATTCGTGGCT ACCAGTTAAC TCGGGTGCAA
CTGTTTGATC TGTTTCCCCA CTCGGATCAC TTTGAAGTTT TAGCCATGTT GGTAAAAGAT
TCGCGTTAG
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| Protein sequence | MQCGYFERGQ CQSCRHIKLP MVQQLAAKTQ ELQQLLAPFV VSTNTQFLPP VVGEDSGFRN
KAKMVVLGAA HAPVLGIVSP NGEAVSLCDC LLYPADMQAL LYRLERFVQQ AGIPPYRIDK
AKGELKYILL TRSQVRGEYM LRFVLRSPDA IARIERELPA LMAEYPQINV VSVNIQPIHM
AILEGDEEIF LTENTRLEER FNDVPLFIRP KSFFQTNPHV AAKLYQTARE WVGEFAPKSL
WDLFCGVGGF GLHCASKDIP LTGIEIEAEA IACAKMSAQM MGLDNVQFMA LDSTDFAKGD
AAATKPDLII VNPPRRGIGE SLCDALSEFA PRAILYSSCN PKTLAKDLVH IRGYQLTRVQ
LFDLFPHSDH FEVLAMLVKD SR
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