| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_0897 |
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| Symbol | dbpA |
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| ID | 1168744 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella oneidensis MR-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004347 |
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| Strand | + |
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| Start bp | 924809 |
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| End bp | 926185 |
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| Gene Length | 1377 bp |
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| Protein Length | 458 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 637342866 |
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| Product | ATP-dependent RNA helicase DbpA |
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| Protein accession | NP_716527 |
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| Protein GI | 24372485 |
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| COG category | [J] Translation, ribosomal structure and biogenesis
[K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG0513] Superfamily II DNA and RNA helicases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCTTTCT CGACCCTTAA GCTAAAAACC GAACTGCTTG AGAACCTTTC TTCTATGGGC
TACAACGAGA TGACGCCCAT TCAGGCGCAA AGCTTGCCAG CCATTTTAGC GGGCGAGGAT
GTGATAGGTC AGGGTAAAAC GGGGTCAGGT AAAACGGCGG CCTTTGGTCT AGGTTTACTA
AATAAATTAG ACGTTAAGCG TTTTCGCATT CAAACCTTAG TACTGTGTCC AACCCGCGAG
CTGGCCGACC AAGTGGCGCA GGAGATCCGT ACTCTGGCCC GCGGTATACA CAATGTGAAA
GTATTAACCC TGTGTGGTGG TGTGCCCATG GGGCCGCAAA TTGGCTCTTT GGAGCATGGT
GCCCATATTA TTGTGGGAAC CCCAGGGCGG ATCGTCGATC ACTTAGACCG CAATCGTTTA
GATTTAAGTA ATCTGAATAT GTTAGTGCTT GATGAAGCTG ACCGCATGCT CGAAATGGGC
TTCCAACCTC AGCTCGATGC CATTATTGAA CAGTCACCAC GAGAGCGCCA AACGCTGCTG
TTTAGTGCGA CATTCCCTGA GCAAATTCAA TCGATTGCTA AACAAATCAT GTATAACCCT
GTGATGGTTA AGGCCGCGGT TACCCATGAA AAAAATACCA TCGAACAGCA TTTTTATCAG
TTAGATGACG ATAAGTCGCG CATGCAAGCG CTGCAATTAT TACTGTTAGA ACATAAGCCA
GAAAGCGCCG TGGTGTTTTG TAATACCAAG CGTGAAACGC AAAAAGTGGC CGACGAACTT
GAGGGTTTAG GCTTTAGTGT TTTAGCCTTG CACGGCGATT TAGAGCAGCG CGATAGGGAC
GAAACCCTGT TGCAATTTGC CAATAAGAGT GCCTGTGTAT TAGTGGCTAC CGACGTGGCC
GCCCGTGGTT TAGATATCGA TGCACTAGAT GCGGTATTTA ACTACCATGT GGCCTACGAT
ACCGAAGTTC ACATTCACCG TATCGGCCGT ACAGGTCGTG CGGGCAGTAA AGGCGCTGCT
TATACCTTTT ACAACGATCA AGACGGTTAC AAGATTGCCT TGCTAGAAGA GTACTTAGAT
CGAGAAATTA CCAGTGAATC ACTGCCATCA TTAAGCTTGC TTGGCAGTGC GCCCAATGCG
CCAACCATGA TCACTCTGCA AATCGATGGC GGTAAAAAAG AGAAACTTCG CCCTGGCGAT
ATTCTTGGCG CCCTGACGGG TGATAATGGC ATTGAAGGTA CGCAGGTGGG CAAAATTCTT
GTGACTGATT ATCGCGCTTA TGTGGCGGTA AACCGTAAAG TGGCTAAAAA GGCACTGAGC
AAGATCACCA GCGGCCGCAT TAAGGGTAAG TCTTACCGCG CATGGTTGAT GAAATAA
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| Protein sequence | MAFSTLKLKT ELLENLSSMG YNEMTPIQAQ SLPAILAGED VIGQGKTGSG KTAAFGLGLL
NKLDVKRFRI QTLVLCPTRE LADQVAQEIR TLARGIHNVK VLTLCGGVPM GPQIGSLEHG
AHIIVGTPGR IVDHLDRNRL DLSNLNMLVL DEADRMLEMG FQPQLDAIIE QSPRERQTLL
FSATFPEQIQ SIAKQIMYNP VMVKAAVTHE KNTIEQHFYQ LDDDKSRMQA LQLLLLEHKP
ESAVVFCNTK RETQKVADEL EGLGFSVLAL HGDLEQRDRD ETLLQFANKS ACVLVATDVA
ARGLDIDALD AVFNYHVAYD TEVHIHRIGR TGRAGSKGAA YTFYNDQDGY KIALLEEYLD
REITSESLPS LSLLGSAPNA PTMITLQIDG GKKEKLRPGD ILGALTGDNG IEGTQVGKIL
VTDYRAYVAV NRKVAKKALS KITSGRIKGK SYRAWLMK
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