Gene SO_0821 details

Gene Information

• Locus tag: SO_0821
• ID: 1168672
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella oneidensis MR-1
• Kingdom: Bacteria
• Replicon accession: NC_004347
• Strand: +
• Start bp: 836192
• End bp: 838162
• Gene Length: 1971 bp
• Protein Length: 656 aa
• Translation table: 11
• GC content: 52%
• IMG OID: 637342795
• Product: ABC transporter, ATP-binding/permease protein
• Protein accession: NP_716452
• Protein GI: 24372410
• COG category: [V] Defense mechanisms
• COG ID: [COG0577] ABC-type antimicrobial peptide transport system, permease component; [COG1136] ABC-type antimicrobial peptide transport system, ATPase component

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGACTAAGC CATTACTGGA AGTGTCAGCT TGCTACCGCA GCTTTCAGGC GGGTGAGCAA 
CAACTGACTG TACTTAAAGA TATTAATCTT TCGATCGCTC GGGGTGAGAT GGTGGCGATC 
GTCGGCGCCT CAGGTTCGGG CAAGTCAACC CTGATGAATA TCTTGGGCTG TTTAGATAAA 
CCCTCAAAGG GCGCGTACTT TATCGATGGC CAAGATACGT CGCAGATGGA TGTGGATGAA 
CTAGCAAAGC TGAGACGTGA GCATTTTGGC TTTATTTTCC AGCGGTATCA TTTGCTTGGG 
GATCTGAATG CCGTAGGTAA CGTCGAAGTG CCCGCTGTGT ATGCGGGTAA AGATCGCTTA 
GAACGTCGGG ATCGGGCGGA AAGCTTGTTA TCGCGCTTGG GTTTAGGTGA GCGTCTCGAT 
CATAAACCCA ATCAGCTCAG TGGCGGCCAG CAGCAAAGGG TGAGTGTGGC GCGGGCGCTG 
ATGAATGGCG GCGATGTGAT CCTCGCCGAC GAACCGACGG GCGCACTAGA TAGTCACAGT 
GGTGAAGAAA TGATGCGGCT ATTGCAGGAG CTGCATCGCG AAGGCCACAC TATCATCATC 
GTCACCCACG ATATGCATGT GGCGCAGCAT GCGGATCGCA TTATCGAGAT TAAGGACGGG 
GTAATTATTA GCGATGAGCC TAATCTTGCC TCGCAAACAG CGGTAAAAGC GCAAGTTGAT 
ATGAGCCTTG CAAAGCCTTC GGGAGCAACT CGCGTCGCAG CGTGGGACAG ATATGCTGAA 
GCCTTAAAAA TGGCGCTACT GGCGATGTCG ACCCACAGAC TGCGCACCTT TTTAACTATG 
CTGGGGATTA TTATCGGTAT TGCTTCCGTC GTGTCGGTGG TGGCGCTGGG GGAAGGCTCA 
CAGCGGGAAA TCTTAAAGAG CATTAGTTCA ATGGGCACCA ATACCATAGA CATTCGCCCT 
GGTTTAGGCT TTGGCGATAG GCGCTCGGCA AGGGTGCGCA CCTTAACCGC GAGCGATGCC 
AATGCGCTAA AAAATCTACC CTATGTGGAT AGTGTTACTC CAAGTATTAG CTCGAGCGTG 
ACAGTGCGTT TAGGTAATAA AGCCGTTACC GCATCAGTGA ATGGTGTGGG GCCAGAGTTT 
TTCCGGGTTC GAGGCTATGA GCTTGCCCAA GGGCAGTTTT GGGACGATGA CAGCGTTGAT 
GCACTGGCGC AGGATGCGGT GATCGATGAT AACACTCGCA AACAGCTATT CCCCGATAGC 
ACCGGGGCTA TGGGTTCTGT CATCGGCCAA GTGATCTTCT TGGGGGATTT ACCCGTGCGG 
ATTATCGGTG TGACTAAGCC TAAGGAAAGC GCCTTTGGTA ACAGTGATGC CCTCAATGTT 
TGGGTGCCTT ACACCACGGT TTCTGGCCGA ATGGTGGGCA AGAAATACCT CGATGGCATT 
ACTGTCAGGC TCGATGAATC CGTGCCAAGT AATGCGGCGG AGCAGGGGAT CATTACTCTG 
CTGAAGATGC GCCACGGCAC TCAGGATTTC TTTACCATTA ATACCGATAC TATCCGCCAG 
AATATTGAAA AAACCACCGC GACCATGACG CTATTAATCT CGGCGATTGC GGTGATTTCC 
CTTGTGGTGG GTGGGATTGG GGTAATGAAT ATCATGTTGG TGTCAGTGAC TGAACGTACT 
CGCGAGATTG GTGTGCGCAT GGCGGTCGGA GCGCGCCAGA GCGATATTCT GCGGCAGTTT 
TTAATTGAAG CTGTGTTGGT TTGTTTGTGT GGCGGCGCAC TTGGGGTGGC CTTGGCCTAT 
TTAATTGGCG TGGTGTTTGC GCAAGCGGGC GGGAGTTTCC AGATGATTTA TTCGACGACC 
TCGATTGTTG CTGCCTTTGC TTGTTCGACC TTAATTGGGG TGTTGTTTGG TTTCCTCCCT 
GCCCGTAATG CGGCGCGTTT AGATCCTGTT GAGGCCCTGG CTAGAGAGTA A 

 

Protein sequence

MTKPLLEVSA CYRSFQAGEQ QLTVLKDINL SIARGEMVAI VGASGSGKST LMNILGCLDK 
PSKGAYFIDG QDTSQMDVDE LAKLRREHFG FIFQRYHLLG DLNAVGNVEV PAVYAGKDRL 
ERRDRAESLL SRLGLGERLD HKPNQLSGGQ QQRVSVARAL MNGGDVILAD EPTGALDSHS 
GEEMMRLLQE LHREGHTIII VTHDMHVAQH ADRIIEIKDG VIISDEPNLA SQTAVKAQVD 
MSLAKPSGAT RVAAWDRYAE ALKMALLAMS THRLRTFLTM LGIIIGIASV VSVVALGEGS 
QREILKSISS MGTNTIDIRP GLGFGDRRSA RVRTLTASDA NALKNLPYVD SVTPSISSSV 
TVRLGNKAVT ASVNGVGPEF FRVRGYELAQ GQFWDDDSVD ALAQDAVIDD NTRKQLFPDS 
TGAMGSVIGQ VIFLGDLPVR IIGVTKPKES AFGNSDALNV WVPYTTVSGR MVGKKYLDGI 
TVRLDESVPS NAAEQGIITL LKMRHGTQDF FTINTDTIRQ NIEKTTATMT LLISAIAVIS 
LVVGGIGVMN IMLVSVTERT REIGVRMAVG ARQSDILRQF LIEAVLVCLC GGALGVALAY 
LIGVVFAQAG GSFQMIYSTT SIVAAFACST LIGVLFGFLP ARNAARLDPV EALARE