| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_0702 |
|---|
| Symbol | |
|---|
| ID | 1168562 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella oneidensis MR-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004347 |
|---|
| Strand | - |
|---|
| Start bp | 719084 |
|---|
| End bp | 720442 |
|---|
| Gene Length | 1359 bp |
|---|
| Protein Length | 452 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 637342687 |
|---|
| Product | MATE efflux family protein |
|---|
| Protein accession | NP_716335 |
|---|
| Protein GI | 24372293 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0534] Na+-driven multidrug efflux pump |
|---|
| TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAGACA GACACGGGCT GCTTAGCGCG CCAATTGGTC GTGTACTGCT CAACATGAGC
CTCCCCAACT TGATTGGCAT TATGACCATT CTCGGGTTTA GCCTTGCTGA CACTTTTTTT
ATCAGCCAGT TAGGGACAGA AGCCTTAGCA GCGATCAGTT TTACTTTTCC AGTAACCTTG
ATTATTTCCA GCATTGCCAT TGGCGTGGGT GCTGGGGTAT CGACCAATCT TGGACGGCTG
ATTGGTTCAG GTAACGCCCC GCAGGCAAAG GTTTTTTTGC ACGATGCGCT GCTGCTCACT
TTTATCCTTA TCGCCAGTTT ATCCGCCCTT GGCAGCATTT TTATCGAGCC ACTGTTTAGT
TTGCTTGGCG CCAATGAAAC CAGTTTGCCG CTCATTCATG ACTATATGAT GTATTGGTAT
GTGGGCGCGC CGCTGTTGGT GTTATTAATG GTGGGCAACC AAGGCCTACG TTCGACGGGA
GACACCCGCT CCCCGGCGAT GATTATGACG CTGGCGGCGA TCATTAACTT AATCCTCGAT
CCTTTGCTTA TCTTCGGCAT TGGGCCTTTT CCCCGTTTAG AGATCCAAGG TGCGGCAATT
GCGACCCTGT TCTCATGGCT TGTCGCGTTG TCGCTCTCGG GTTATTTGCT GATCATTAAG
CATCGAATGC TTGAGCGGGC GGCATTTGAT ATCGATAGAA TGCGCGCCAA TTGGAGCAAG
CTTGCCCATA TCGCCCAACC TGCGGCTTTG ATGAATTTAA TCAATCCACT GGCCAATGCG
GTGATCATGG CGATGCTGGC GCATATCGAC CATAGCGCGG TGGCAGCGTT TGGTGCGGGT
ACGCGCTTAG AATCGGTGCT GTTAATTGTG GTCATGGCAT TATCATCGAG CCTGATGCCG
TTTATTGCAC AAAATCTCGG TGCTGGCCAA CCCCAAAGGG CGAAGCAGGC TTTGCTGCTA
TCGCTTAAAT TTATCTTAGT ATTCCAAACC TTACTCTATA TTCCGCTGGC ATTTTTTGCC
CAGCCACTCG CGAGTTTATT CAGTACCGAT CCGCAGGTGT TAGAGTGGTT AAGTTTTTAT
ATTCTGGTTT TGCCCTGCGC CTATGGTCCG CTGGGGATAG TGATTATTTT CGCCACTGCG
CTAAATGCTT ACCACAGACC GATGAGCTCA TTAGTGATTA ACCTGTGCCG CTTAGTGCTA
TTGATGCTGC CACTGGCTGC GCTTGGGTCT TATATCGATG GCGTGAAAGG CTTATTGCTC
GCACTCCCCA TCACTAACTT GCTGATGGGG ATTGCCTGTT ATTATCTAGC CCAGCGGATT
TGCGAGCCCG TAAAAGCCAC AACCGCCGAC ACCCTTTAG
|
|---|
| Protein sequence | MKDRHGLLSA PIGRVLLNMS LPNLIGIMTI LGFSLADTFF ISQLGTEALA AISFTFPVTL
IISSIAIGVG AGVSTNLGRL IGSGNAPQAK VFLHDALLLT FILIASLSAL GSIFIEPLFS
LLGANETSLP LIHDYMMYWY VGAPLLVLLM VGNQGLRSTG DTRSPAMIMT LAAIINLILD
PLLIFGIGPF PRLEIQGAAI ATLFSWLVAL SLSGYLLIIK HRMLERAAFD IDRMRANWSK
LAHIAQPAAL MNLINPLANA VIMAMLAHID HSAVAAFGAG TRLESVLLIV VMALSSSLMP
FIAQNLGAGQ PQRAKQALLL SLKFILVFQT LLYIPLAFFA QPLASLFSTD PQVLEWLSFY
ILVLPCAYGP LGIVIIFATA LNAYHRPMSS LVINLCRLVL LMLPLAALGS YIDGVKGLLL
ALPITNLLMG IACYYLAQRI CEPVKATTAD TL
|
|---|
| |