| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_0632 |
|---|
| Symbol | hrpB |
|---|
| ID | 1168495 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella oneidensis MR-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004347 |
|---|
| Strand | + |
|---|
| Start bp | 658076 |
|---|
| End bp | 660583 |
|---|
| Gene Length | 2508 bp |
|---|
| Protein Length | 835 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 637342620 |
|---|
| Product | ATP-dependent helicase HrpB |
|---|
| Protein accession | NP_716265 |
|---|
| Protein GI | 24372223 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1643] HrpA-like helicases |
|---|
| TIGRFAM ID | [TIGR01970] ATP-dependent helicase HrpB |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGAACAATC TACCTATTCA TTCCTTACTG CCATCTCTGC GTGATGCCTT TGCTACGCAC
GCTCAAGTGA TCCTCGAGGC ACCCACAGGC GCGGGTAAAT CCACCGCCTT GCCTTTAGCC
ATGTTGGATT GGGCTGAGAT TTCGGGGCGG ATTTTAATGC TGGAACCTCG ACGTGTGGCC
GCTCGCAGTG TGGCGCAGTT TATCGCCAGT TGTCGGCAGC AGGCGGTGGG GCAAGAGGTG
GGTTTTAGGG TGCGTGGCGA GGCCAAGGTA AGTCGCGATA CTCGGCTTGA GATCGTCACC
GAAGGGATAT TAACCCGAAT GATCCAGCAA GATCCTGAAT TGACTGGGAT CGATATGATC
ATTTTCGATG AGATCCACGA GCGGCATTTG ACCACAGATC TTGGTTTAGC CCTTGCTCTT
GAAGTGCAAA GCTCACTGCG GGATGACTTA AAAATCCTCG CCATGTCGGC AACCTTATCA
GGCCTTGCGC TCAGCGAGTT AATGCCATAC GCAGCCCTGC TCAAGAGTGA AGGTCGCACT
TTTCCGGTTG AAATCATCTA CCGTGCAGTC GCGGGCCAAC AGCATTGGCT CGATCATCTG
AGCCGCACAG TGCTCGATAG CGCGGCATCA ATAACTGATA GTGGCCCGCA AGATATACTG
GTGTTTTTGC CCGGTAAGGC GGAAATCCTC AGGGTGGCGC AGTATTTGGC GGAGCGCCTC
GATGGTAGCC GTGTGGCTAT TTGTCCGCTT TATGGCGAGT TGTCTGCGCA GGAACAGGAT
AGGGCGATTA AGGCAGACGC AAGTGGCAGG CGCAAGATAG TGCTTTCCAC CAACGTTGCC
GAGTCGAGTC TCACCATTGA AGGCATTGGG CTGGTTATCG ATAGTGGCTA TAAACGCCAA
GCGAGTTTTA ACCCTAAAAC TGGGGTCACG CGCTTAAGCC TTAAACGTAT TAGCCAAGCC
TCGGCAACCC AACGTGCTGG CCGTGCTGGC CGTTTAGCGG CGGGCGTGTG TATTCGATTA
TGGGGTCAAG AAGAGCATCA GCGTCTGCTC AAAGCTGATG AGCCCGAAAT CAGTCAAGCT
GATTTGGTTT CTATGGCCCA TGACTGCGCC TACTGGGGGG CTAAATCCTT CAGCGATTTG
CTGTTATTGA CCGCGCCGCC CAGTGTGAAC GAAGCACTGG CGTGGCAACT GCTGCGGCGC
TTAGACGTGG TCGACGGGCA AAACAAGCTC ACTGCGCATG GTAAAGCCGC CTATGAGCTG
GGCTGTCATC CGCGCCTTGC GCATATGTTA TTAGCCGCCA AATCCCATTC TACTGAACTT
GCGGCCTTGG CCTGCCTGCT CGCGGGCATT TTAGAGGCGC GGGGATTGCC CCGCAAAGGC
GCTGATATCA TGAATTACTT ACACTTTGCC ACCCAAGGCA GTGCGGGGCA GCAGGCAAAA
CAATGGCTGA GAAAGCTCGC CCTTGATAGC AAGTTCACCC AAGCTGATTT AGGCGCCATA
GCCTCCCATG CGCATCATCG AGATGTGGGC TTACTGTTGG CGCTGGCTTA TCCCGATCGC
ATCGCCAAAT CCCGTGGCGT TGAGGGCTAT CAATTGGCCA ATGGCACGGG CGTGGTGCTC
AGCGCTGAAG ATGCCTTAGC GCAAACCCCT TGGTTGGTGG TGGCTGATTT TCAAGAAACC
GAAGGTAAAA CTGCTGGGCG GGTCTATTTA GCTTGTCCGT TGCAACCGAG CCTATTTGAT
CATGAGTTGG CCGACTTAGT TGATACTCAT GAGCAGTGCG GCTGGGATGA AACTAAAGGT
CGCGCTGTTG CTGAGCGGCA AGCAAAAGTC GGGCAGATAT TGCTGAAATC CGAGACGATT
GCTAACCCCA ATCGAGCGCA AATTGTGGCG GCATTAGTGA ATTATATCCG CCAGCAAGGG
TTACAAATTC TTAATTGGAA CGCTAACTTA GAGCAGTTTC AAGCGCGATT GCATTTAGCG
AGAAGCTTAG ATCCGACTGC TGATTGGCCG GATATGAGCG ATGCAGCTCT GCTGGCTGAT
CTTGAAACTT GGCTGGCGCC TTACCTCGAA AATGTGAATA ATCTGCCGCA ATTACAAAAA
CTCGATTGCT TTAGTTTAGT GATGAATCAA TTGAGTTGGT CGCAGCAGCA GGCGCTCGAT
GCACTGTTGC CGACCTCATG GCCTTTAGCC ACGGGCACCT TTGCGCCCAT AGTGTACGAA
ACCTCGGGTC GCGCCTTGCT GCGGGTTCGT TTGCAGGAAA CCTTTGGCAT GGCTGACAGC
CCGCTATTGG CCCAAGGTAA GCTGAAGGTG ACGATGGAGC TGCTGTCTCC AGCGCAGCGC
CCTTTGGCAT TGACGGCGGA TCTCGCCAGT TTTTGGCAAG GCCCTTATGT TGAAGTGAAA
AAAGAAATGC GTGGGCGTTA CCCTAAACAC CTGTGGCCGG ACGACCCTGC CAATACGCTA
CCCACAAAAT TTACCAAGAA GAAAACCTTA GGTTTATCTC AGTCATAG
|
|---|
| Protein sequence | MNNLPIHSLL PSLRDAFATH AQVILEAPTG AGKSTALPLA MLDWAEISGR ILMLEPRRVA
ARSVAQFIAS CRQQAVGQEV GFRVRGEAKV SRDTRLEIVT EGILTRMIQQ DPELTGIDMI
IFDEIHERHL TTDLGLALAL EVQSSLRDDL KILAMSATLS GLALSELMPY AALLKSEGRT
FPVEIIYRAV AGQQHWLDHL SRTVLDSAAS ITDSGPQDIL VFLPGKAEIL RVAQYLAERL
DGSRVAICPL YGELSAQEQD RAIKADASGR RKIVLSTNVA ESSLTIEGIG LVIDSGYKRQ
ASFNPKTGVT RLSLKRISQA SATQRAGRAG RLAAGVCIRL WGQEEHQRLL KADEPEISQA
DLVSMAHDCA YWGAKSFSDL LLLTAPPSVN EALAWQLLRR LDVVDGQNKL TAHGKAAYEL
GCHPRLAHML LAAKSHSTEL AALACLLAGI LEARGLPRKG ADIMNYLHFA TQGSAGQQAK
QWLRKLALDS KFTQADLGAI ASHAHHRDVG LLLALAYPDR IAKSRGVEGY QLANGTGVVL
SAEDALAQTP WLVVADFQET EGKTAGRVYL ACPLQPSLFD HELADLVDTH EQCGWDETKG
RAVAERQAKV GQILLKSETI ANPNRAQIVA ALVNYIRQQG LQILNWNANL EQFQARLHLA
RSLDPTADWP DMSDAALLAD LETWLAPYLE NVNNLPQLQK LDCFSLVMNQ LSWSQQQALD
ALLPTSWPLA TGTFAPIVYE TSGRALLRVR LQETFGMADS PLLAQGKLKV TMELLSPAQR
PLALTADLAS FWQGPYVEVK KEMRGRYPKH LWPDDPANTL PTKFTKKKTL GLSQS
|
|---|
| |