| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_0529 |
|---|
| Symbol | trpI |
|---|
| ID | 1168399 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella oneidensis MR-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004347 |
|---|
| Strand | - |
|---|
| Start bp | 551820 |
|---|
| End bp | 552704 |
|---|
| Gene Length | 885 bp |
|---|
| Protein Length | 294 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 637342523 |
|---|
| Product | trpba operon transcriptional activator |
|---|
| Protein accession | NP_716165 |
|---|
| Protein GI | 24372123 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGACATT TAAAAGCATT CTATGTATTT CATATTACAG CCGAGTCCTC GAGTTACAGC
CAGGCCGCGG AGAAACTGCA TATCACCCAC GGAGCAGTCA GTAAGCAAAT AAAACTCTTG
GAAAACCACT TATCGCAAAT ATTGTTTTAT AAGCAAGGCC GGGGAATGTG CCTCACCCAA
GAGGGGGAAT TGCTTAAGCG CTACACAGAT ATTGCCTTTA ACACTTTAGA TAGCGGGGTA
AAGCAGCTGA CTCGGGAGAG CCATCATTAC CTTGAGGTCT CCTGCGAACC CACACTTACC
ATGCGCTGGT TAATGCCACG GCTAGCCAGT TTTTTCCAGC TAACGGGCAT AGACGTTCGG
TTATCGACGG CAGGAGGTCC GGTAAAGCTC GCGGAGTCTG GATTATCTTT GGCCATTCGG
CGAGACGATT TTCATATTCC CCCAGAATAC AACAAACACA ACCTAGTGAG TGAGTGGGCT
GGCCCAGTGT TTTCGCCTGA ATATTGGTGC CAAATTCAGC AAAACTGGGG GGATATTGTC
CTACTTCATA GCGACTCTCG ACCATCAGCA TGGTCCGATT GGTCGCAGCG TTCAGGGCAC
AATTTCTCCA CCAACAAATC GAAATCCTTT GAGCATTTCT ATTTCTGCTT GCAGGCAGCG
GTTGATGGGC TCGGAGGCGC TATAGGCTCG TATCCCTTGA TTGTTGACGA CCTAACAAGC
GGCAGACTTG TCGCGCCATT TGGCTTTATC CCATCAGGGC ATCATTATGT GTTGTTGAGT
CATACGGAGA AACTTGTCAA CAATGAATTG TCATTTTTCA ACTGGTTAGA AGATACCCTC
TCCTTATGTC AACCCAAAAC CGCTAAGGCC GCAAAGCCTG TGTAA
|
|---|
| Protein sequence | MRHLKAFYVF HITAESSSYS QAAEKLHITH GAVSKQIKLL ENHLSQILFY KQGRGMCLTQ
EGELLKRYTD IAFNTLDSGV KQLTRESHHY LEVSCEPTLT MRWLMPRLAS FFQLTGIDVR
LSTAGGPVKL AESGLSLAIR RDDFHIPPEY NKHNLVSEWA GPVFSPEYWC QIQQNWGDIV
LLHSDSRPSA WSDWSQRSGH NFSTNKSKSF EHFYFCLQAA VDGLGGAIGS YPLIVDDLTS
GRLVAPFGFI PSGHHYVLLS HTEKLVNNEL SFFNWLEDTL SLCQPKTAKA AKPV
|
|---|
| |