| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_0437 |
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| Symbol | |
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| ID | 1168313 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella oneidensis MR-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004347 |
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| Strand | + |
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| Start bp | 461211 |
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| End bp | 463781 |
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| Gene Length | 2571 bp |
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| Protein Length | 856 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 637342437 |
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| Product | sensory box protein |
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| Protein accession | NP_716074 |
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| Protein GI | 24372032 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGCATAG GCAACAAAAT ATTGGTATTT ATTGTAGGGT TCTGTTTACC TGCGGTTGTG
CTTGTCTCCT ATTGCCTCGG TGTTTGGTTT GACCATAGGG TCGAATTATT ACGTCAAGAT
AATGTGCGGC ACGAGTTGGC GAATATCCAG CAGCAGTTTC GAATCGATGT TGATCGGTTA
GGTTTTCTCA CTAATATCTA TGCCTCACCA TTATCTCATC TCGATAGTGA GCAGTTAAAA
TCCCTCGAAT CCTCGTGGCT TGAGAGCTCC ATGTCTGGCA ATTTAAGCTG GTTTATTCTG
CGCGACGGAA ATTTGCAAAA TGTTTTCCAG AACGAGCAAC CAATCGCAGA AGCCAATCGG
CAGGAAATTG CTAAGGCGAT AACAACGCAG GCTAAGCCCG AGTTTGCAAG CGCCTATTTA
ATTGGCGATA AAGGATATGT GGTGACGGCA GTCGCTTCAC ATCTGGGCGA GTATGTGTTG
TTGGTGCGGC AACTTACTGA GCGTGATCTA CTGGAATATG CTCAAACCTC CCTCGTTGCT
CGGGTCAGCA TGTCTAATGT TGTAACAGCC CATCATTCCT CACACTCAAG TTCGGTTGCG
TTGCCGAGTT TGATTAGTCA GCAACCTATT TATCTTCACG TTGAATTTTC CGATGATCCC
TTCCGTGATG TAAAACTTAG CCTCGACTGG GTGTCGCTCG CGGTGATCTT GCTGGGGATA
TTGATTGTTG CCTTAGGTTA TGTTTGGTTG CGTGCGTGCC TATTACAGCC CTTTAAAAGC
TTAATGCAGC AATTGGCGCT TGTTGATCCC ATGGCAAGTG TCTATCGGCC TGTTACCAGC
GAGGGCAATG AAGAGTTATC TGTGCTGGCG AATAGAGTCA ATAGCCTACT CGCAAGGATT
TATCAGCAGA AAGAGCGCGG TAAAATAACC TTAGAGTCGA TTGCCGAAGC CGTGATCTTG
ACCGACATCG AGGCCAAGGT AATTTATATG AATCCTAAGG CCGAAACACT GCTTGAAGTT
GCCAGTTCTA ATGCCGTTGG CGAGAGCCTT GCTAGTTTAT TAAAGGCGGG AGAGCAGTTA
AATCAAGCGG TATTTCACTG TATTCGTCTT GGGGAAACAA TGCCTCAGGT CGCTAAAATC
AAATTGTTAA CCACAATGCC GCGGATTATC GAACGTAGCA TTAGCAATGT CCTTAATCAT
GAAAAAGAGA TTGTCGGAAC TGTGGTGGTG CTGCGGGATA TTACCCAAGA AGAACTTCTT
AAGCATCAGC TACAAAAACG CGCTAATTTC GATGGCATCA CTGGGCTACT GAATCGGCAA
GCATTTGAAG AACAACTGCC CGAATTTGCC AGTCAGGCGA GGAGCCTTGC AGTATGTTAT
CTGGATTTAG AGCAGTTTAA GCTGATCAAT GATAGCTGTG GGCATACTGC GGGTGATCGT
ATGTTGGCGA TGGTCGCTAG GGCGATTCAG TCATGTCTTG GGCCACAGGA ATTATTAGCC
CGCATAGGAG GTGATGAGTT TGGATTGGTG ATTTGCGATC GCACCGCGTT AGCTGTGGCG
CAGTTGCTGA AGCAAATTAT TGCTCAAGTA TCGCTGCAAG TGCTGCACGA CAAAAACTGC
AACTACAAAG TGGGGTTAAG TATTGGTGTT GCCTTTGGAC GAGCGCCCTA TATTAATGCG
CAAGAGTTAC TTAAGGATGC AGATATCGCC TGTATTGCCG CTAAAGCCAA GGGCACCAAC
CAAATCCACA TTTACGATGA TAAAGATAAA GAGCTGACTT ATCAGCGCAA TGCTCCCAAA
TGGGCGGTGC GTATTGCCCA GGCGATTGAA GAAAATGAAC TGCTACTTTA TTACCAGCCA
ATCCGAGGAT TAGGCGCCAG TTCTAAACGC CAGCGGATGG AGGTTTTACT TAGGATCCAA
GAGCCCTGCG GCCGTATTTT GGCGCCGGCG CAGTTTATTG CCGCAGCAGA GCGTTTTAAG
CTGATGCCTG AAATTGATAA AGAAGTGATA CGTAAAGCCT TTTTATGGCT GTCTTTAAAT
TCGCAGCTTT GGCAGGATCA CTGCATCTCA ATCAACCTTT CGGGCAATAG TTTAGGCGCC
GAAGGCATGG TGGAATATAT CGCCAAGCAG CAACAGATTT TTGATATTCC GAGCCAATGT
GTGTGCTTTG AAATTACTGA AACTACCGCT ATTCAAAACC GCCACCGCGG CATGGAAATG
CTCAGACAGC TGCGCAAACT CGGGTTTTCC TTTGCATTGG ACGATTTTGG CAGTGGCTTT
GCTTCCTACG GCTATTTACG CGAATTACCT GTGGATTACG TAAAAATAGA CGGCTGCTTT
GTTAAAAACC TTGCCGTTAA TGCCAAGGAC TATGCCATCG TGAAATCCAT TCAAGACGTG
TGTCGTGTTA TGGGGATCGA AACGGTTGCT GAATTTGTTG AAAATCAAGA GATTATTGAT
AGGTTGCAAA CGATTGGTAT CAACTATGCG CAAGGTTATG CAATCGGACG GCCGCAACCT
TTAGCGAGTT ATTGCGAGCA GTTTGAGACG CGCTTAGCAC AACGCGCATA G
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| Protein sequence | MRIGNKILVF IVGFCLPAVV LVSYCLGVWF DHRVELLRQD NVRHELANIQ QQFRIDVDRL
GFLTNIYASP LSHLDSEQLK SLESSWLESS MSGNLSWFIL RDGNLQNVFQ NEQPIAEANR
QEIAKAITTQ AKPEFASAYL IGDKGYVVTA VASHLGEYVL LVRQLTERDL LEYAQTSLVA
RVSMSNVVTA HHSSHSSSVA LPSLISQQPI YLHVEFSDDP FRDVKLSLDW VSLAVILLGI
LIVALGYVWL RACLLQPFKS LMQQLALVDP MASVYRPVTS EGNEELSVLA NRVNSLLARI
YQQKERGKIT LESIAEAVIL TDIEAKVIYM NPKAETLLEV ASSNAVGESL ASLLKAGEQL
NQAVFHCIRL GETMPQVAKI KLLTTMPRII ERSISNVLNH EKEIVGTVVV LRDITQEELL
KHQLQKRANF DGITGLLNRQ AFEEQLPEFA SQARSLAVCY LDLEQFKLIN DSCGHTAGDR
MLAMVARAIQ SCLGPQELLA RIGGDEFGLV ICDRTALAVA QLLKQIIAQV SLQVLHDKNC
NYKVGLSIGV AFGRAPYINA QELLKDADIA CIAAKAKGTN QIHIYDDKDK ELTYQRNAPK
WAVRIAQAIE ENELLLYYQP IRGLGASSKR QRMEVLLRIQ EPCGRILAPA QFIAAAERFK
LMPEIDKEVI RKAFLWLSLN SQLWQDHCIS INLSGNSLGA EGMVEYIAKQ QQIFDIPSQC
VCFEITETTA IQNRHRGMEM LRQLRKLGFS FALDDFGSGF ASYGYLRELP VDYVKIDGCF
VKNLAVNAKD YAIVKSIQDV CRVMGIETVA EFVENQEIID RLQTIGINYA QGYAIGRPQP
LASYCEQFET RLAQRA
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