Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SO_0414 |
Symbol | pilD |
ID | 1168291 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella oneidensis MR-1 |
Kingdom | Bacteria |
Replicon accession | NC_004347 |
Strand | - |
Start bp | 428993 |
End bp | 429919 |
Gene Length | 927 bp |
Protein Length | 308 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 637342416 |
Product | type 4 prepilin-like proteins leader peptide processing enzyme |
Protein accession | NP_716052 |
Protein GI | 24372010 |
COG category | [N] Cell motility [O] Posttranslational modification, protein turnover, chaperones [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1989] Type II secretory pathway, prepilin signal peptidase PulO and related peptidases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACTGAAT TTTTCACTTT ATTGGGTCAC ACCTTTGACC AAGCACCATG GCTTTTTATC TCATTAAGTT TTGTGTTTGC GGCCACCATT GGCAGCTTTT TAAATGTGGT GATTCACCGT TTTCCGGTGA TGATGAAACG CGAATGGCAG CAGGAATGTA ATCAGTATTT GCAGGAATAT CATGCCGATA TTGTTAAGCA AGTGGGTATC GATAAGCTCA GTAAAGCGAT AGATCACTAT CCTCCAAAAT ACAATCTCGT GGTGCCAGGC TCCGCTTGCC CTAAATGTAA AACCGCCATC AAACCTTGGC ATAATTTACC GATGTTAGGC TGGTTAATGT TGCGAGGAAA ATGCGCCGCC TGTAGCGCGC CAATCTCAGC CCGTTACCCC ATTATTGAAT TAATAACCGG TTTACTGGTT GCGACATTGG CTTGGCATTT TGGCCCAAGC TGGCAATTTG TGTTTGCTGC AATCCTCACT TTTGTGTTGA TTGCGCTGAC GGGAATCGAT CTGGATGAAA TGCTGTTACC CGATCAGATG ACCCTTCCCC TGCTGTGGTT AGGGCTACTC ATCAACCTAA ACCATACCTT TACCAGCCCA GCCGATGCGA TGATTGGTGC GGCAGCTGGC TATTTAAGTT TGTGGTCGAT TTTTTGGCTG TTTAAGCTGT TAACTGGCAA AGAGGGCATG GGTTATGGTG ACTTTAAACT ACTCGCCGTA TTTGGTGCTT GGCTAGGCTG GCAAATGTTG CCGCTGGTCA TTTTACTTTC ATCCTTGGTT GGCGCCTTCG TTGGCATCAC GCTGATCGTG ACCAAGCGTA ATCAGCTTGC TAACCCGATT CCCTTTGGTC CTTACATTGC CGCCGCAGGC TGGATCGCCC TAATATGGGG CCAACCTATA GTGGATTGGT ATTTAAGTAC GTTATAG
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Protein sequence | MTEFFTLLGH TFDQAPWLFI SLSFVFAATI GSFLNVVIHR FPVMMKREWQ QECNQYLQEY HADIVKQVGI DKLSKAIDHY PPKYNLVVPG SACPKCKTAI KPWHNLPMLG WLMLRGKCAA CSAPISARYP IIELITGLLV ATLAWHFGPS WQFVFAAILT FVLIALTGID LDEMLLPDQM TLPLLWLGLL INLNHTFTSP ADAMIGAAAG YLSLWSIFWL FKLLTGKEGM GYGDFKLLAV FGAWLGWQML PLVILLSSLV GAFVGITLIV TKRNQLANPI PFGPYIAAAG WIALIWGQPI VDWYLSTL
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