| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_0380 |
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| Symbol | hsdR-1 |
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| ID | 1168257 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella oneidensis MR-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004347 |
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| Strand | - |
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| Start bp | 391526 |
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| End bp | 394627 |
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| Gene Length | 3102 bp |
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| Protein Length | 1033 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 637342382 |
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| Product | type I restriction-modification system, R subunit |
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| Protein accession | NP_716018 |
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| Protein GI | 24371976 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0610] Type I site-specific restriction-modification system, R (restriction) subunit and related helicases |
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| TIGRFAM ID | [TIGR00348] type I site-specific deoxyribonuclease, HsdR family |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGATCAGG ATGAACTACA TAAGGTCGAG TTACCCGCTA TTGCCCAATT ATCGCTATTA
GGTTGGCAGT ACGTTGCGGG AGCTAAACTC ACGCCTGAAT ACCATGAGAG ACCCTATCTA
CGGGATGTCG TGCTGGTGGG ACGGCTCGAA GCCGCCATTA AAAGAATTAA CCCTTGGATC
AACGATGAAA ACCTGCGCAA GGTTTGCCGT GATATCACCC ATCCAAACTT TGTCGGCTTG
ATGGAATACA ATCAGGCCAT CTATCAAACC TTAGTGAATT ACCTTTCAGT AGAGCAAGAC
GTTGGTAAAG GGCGTAAAGG CCAAACCGTT AAGTTGATTG ATTTTGATAA CCTTGCAGCC
AATGAGTTTA TCTGTACATC ACAGTTTAAA GTGGAAGGCG TAAACCAAAA TATCATCCCT
GATATTGTAT GCTTTATTAA TGGCTTACCG CTGGCAGTGA TCGAATGTAA ATCCCCCTAC
ATTTCAGCAC CAATAAGCGA AGGGATTAAC CAACTACGCC GATATGCCAA CCTACGCAAT
AGCGTCGATG ATGAAGGCGC ACAGCGGCTT TTTTGGTATA ACCAGCTGAT GGTATCGACC
TGTCGCGATC AGGCCAAAGT GGGCACAATT AGTTCCAATG CATCCCACTA TGCTGATTGG
AAAGATGCCT ATCCCTTTAC CGATACCACA TTAAGCGAAC AAAATTTATC TCAGGCTTTT
AGCCGTAATA GCCTCGACGA TATGCAGGTT AACGATAACC CTGCACTGTA CACCGCCACC
AGCTCAAACT ACGATGCAAT CACTGCGGTA ACAGCACAAC AACGCTTGAT TGCAGGTATA
TTCAGCCCTG CTAGCTTTCT CGATATATTG CAAAACTTCA TTATATTTGA GCCAGTAGAA
GGCAAGCTAA TCAAGAAGGT TGCACGTTAC CAGCAATATA GAGCCGTAAA TAAAGTGATT
GAGCGGCTTA AAACAGGCCA AGACCGCAAA GAGAAGTCGG GCGTGGTATG GCATACCCAA
GGCAGCGGCA AATCACTAAC CATGGTTATG CTTGCTGTTA AAATGCGCCG AGATCCTGTG
CTTAAGCAAT ACAAACTTGT GTTTATTACT GATCGTACTC AGTTAGATGA ACAACTATCT
AGCACCTTCC GCGCTGCCCA AGGCGAAACA ATTTATAACG CGGGTTCAGT TGCGGAGCTA
AAAGCACTGC TGAAAAAAGA CAGCTCAGAT CTTGTGACCG CAATGGTGCA AAAATTCTTA
GACCTAGAGA AAGAGCTGAG TACTAACAAT GAAAACGAAG GTTTTATTAA CTTAAACCCA
AGTGACAAAA TTATCGTTCT TGCCGATGAA GCCCATAGAA CTCAGTTTGG CGGCCTTGCC
ATGACCATTA ACGCTGCCCT ACCTAACGCT CCTAAAATTG GGTTTACAGG CACACCACTA
CTAAAAACCC AAAAAATGGA TAAAGCTTTT GGGGGCTATA TTGATGAATA CAAGATCAAT
CAAGCGGTGG ATGATGGCGC AACAGTTCGT ATTTTGTATG AAGGCCGCCA AGTAAAGACC
GAAGTTGCAG GAGAGTCATT AGACAAACTG TTTGAGGCTT ACTTTGGTAG CTATAGCAAA
GAAGAACAGC GGGAGATTAA ACAAAAATAC GGTGTTGAGC GCGCCGTTCG CGAAGCACCT
GCCCGCATTC GCTGGGTTTG CATGGACTTA CTTGAACACT ACCGAAAGCA CATACAACCA
GACGGTTTTA AAGCCATGAT AGTGGTGGGT AGTCGCCATG CGGCCACCAT ATTTAAAAAG
ACCTTAGATG AGTTAGGTGC GCCACCTAGT GAAGTGATTA TCTCGGGTTA TCACAACGAT
GAAGCTTATA TTGCTGTTCA TACCGACAAG ACAAAGCAAA AGAAGATTAT CCAAGACTTT
ACTAAACCAT TATCGGAAAA CCCTGTCGCA TTCTTAATCG TGAAAGACAT GCTACTGACA
GGGTTTGACG CACCGATAGC ACAGGTGATG TACATCGATC GTAAACTACA AGACCATACG
CTGATGCAGG CCATTGCTAG AGTGAACCGT ACCTATGCAA AGAAAGAATG CGGCTTTATT
GTCGATTACT TTGGACTGTC GAACCACCTT ATCGAAGCGA TGGAAATGTT CAGCAGTGAT
GATGTAGAAG GCACGTATCA AAGCCTTAAA GATGAAATTC CCAAGCTAAA AGCTACACAC
ACCCTCGCCA TTTCATTTTT TAGACATATC AAGAATAAAG ACGTTGATAG TTATGTACTG
GCACTCAAAG AGGAAACTGT TCGAGCACAG TTTGATATGG CATTTAAGCG ATTTGCAAAG
CAAATGAACA TCGTTCTGCC CGATGTTGCC GCCGCACCAT TTTTAGCCGA TATGAAACTG
TTGGGCAAAG TCCATAATTC CGCGCGAAAC CAGTACCGTG ATGCTGGTTT AGATATGACT
GATATCGGCG CTAAAGTCCG TAAGCTGGTG GACGAACATA TTTTAAGTAC AGGCGTTGAT
CCCAAAATAC CGCCTATTGA CCTACTTGCC GCAAATTTTA AAGAGAGTAT TCGACCAGAA
AAATCGGCTG AATCTAAAGC TTCTGAAATT GAAAGCGCGA TTAAGCACCA TATTACCGTC
AAGCTTGAGG AAGATCCCGA GTATTACAAA TCACTCAGCC TAAGACTCAG AGACATTATC
GAGAAGACCG CAGGGCAATG GGAACAGCAA TTAGAGCTGT TATTGGCTAT GGTCGACACG
ATTGAGATCG ACCGTCGTAG AGCCGCAAAA GATGCAGGAC TTTCCGAAAC CGAGTTTGCC
TTCTACAACA TACTTACTGC TGAAGTGACC CAAACAAGCG ACATTGAAGT CATAGACGAG
CACCAGTTAA TTGAGATAAA GACAATTACT CAAAACCTTG TCGCAATGTT TGATGAAGCT
ACGCAGATAG TCGACTTTTT TAACAAGGGG GATGAGATAA AGCGGTTGAA AAAAGAGATA
AAACGCGCCG TTATTGATGC ATCATTTAGT AACGTAGAGT TGATATCTAA CCTGCAAGAT
AGATTTATGG AATTGGCAAA ACACAAGTTT AATAAGCAGT GA
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| Protein sequence | MDQDELHKVE LPAIAQLSLL GWQYVAGAKL TPEYHERPYL RDVVLVGRLE AAIKRINPWI
NDENLRKVCR DITHPNFVGL MEYNQAIYQT LVNYLSVEQD VGKGRKGQTV KLIDFDNLAA
NEFICTSQFK VEGVNQNIIP DIVCFINGLP LAVIECKSPY ISAPISEGIN QLRRYANLRN
SVDDEGAQRL FWYNQLMVST CRDQAKVGTI SSNASHYADW KDAYPFTDTT LSEQNLSQAF
SRNSLDDMQV NDNPALYTAT SSNYDAITAV TAQQRLIAGI FSPASFLDIL QNFIIFEPVE
GKLIKKVARY QQYRAVNKVI ERLKTGQDRK EKSGVVWHTQ GSGKSLTMVM LAVKMRRDPV
LKQYKLVFIT DRTQLDEQLS STFRAAQGET IYNAGSVAEL KALLKKDSSD LVTAMVQKFL
DLEKELSTNN ENEGFINLNP SDKIIVLADE AHRTQFGGLA MTINAALPNA PKIGFTGTPL
LKTQKMDKAF GGYIDEYKIN QAVDDGATVR ILYEGRQVKT EVAGESLDKL FEAYFGSYSK
EEQREIKQKY GVERAVREAP ARIRWVCMDL LEHYRKHIQP DGFKAMIVVG SRHAATIFKK
TLDELGAPPS EVIISGYHND EAYIAVHTDK TKQKKIIQDF TKPLSENPVA FLIVKDMLLT
GFDAPIAQVM YIDRKLQDHT LMQAIARVNR TYAKKECGFI VDYFGLSNHL IEAMEMFSSD
DVEGTYQSLK DEIPKLKATH TLAISFFRHI KNKDVDSYVL ALKEETVRAQ FDMAFKRFAK
QMNIVLPDVA AAPFLADMKL LGKVHNSARN QYRDAGLDMT DIGAKVRKLV DEHILSTGVD
PKIPPIDLLA ANFKESIRPE KSAESKASEI ESAIKHHITV KLEEDPEYYK SLSLRLRDII
EKTAGQWEQQ LELLLAMVDT IEIDRRRAAK DAGLSETEFA FYNILTAEVT QTSDIEVIDE
HQLIEIKTIT QNLVAMFDEA TQIVDFFNKG DEIKRLKKEI KRAVIDASFS NVELISNLQD
RFMELAKHKF NKQ
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